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regions.js
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var detailedView = false;
var exploreProfile_hasLoaded = false;
var selectedPolygons;
var regionStations;
var timeRange = {};
function exploreRegions(region) {
var mapLegend = d3.create('div').attr("class", "explore-map-legend")
.attr("id", "explore_map_legend");
mapLegend.append('div')
.text('Map legend')
.attr("class", "explore-map-legend-header")
.append('span')
.attr('class', 'showHide')
.on('click', function(){$(this).closest('.explore-map-legend').toggleClass('hidden');});
selectedPolygons = motusData.polygons.features.filter(x => motusFilter.regions.includes(x.properties.adm0_a3));
motusFilter.regions = motusFilter.regions.filter(d => Array.from(motusData.stationDepsByRegions.keys()).includes(d));
regionStations = motusFilter.regions.map(x => (motusData.stationDepsByRegions.get(x).map(s => s.deployID))).flat();
/*
addExploreCard({data:'chart', type:'regionProfile'});
$("#explore_card_regionProfile .explore-card-header").text(selectedPolygons.map(x => x.properties.name).join(', '));
$("#explore_card_regionProfile").css({width:"calc(50% - 42px)", height: "400px"});
var svg = d3.select("#explore_card_regionProfile svg");
var g = svg.append("g");//.attr("class", "leaflet-zoom-hide");
var dims = [+$("#explore_card_regionProfile").width(), +$("#explore_card_regionProfile").height()];
var path = d3.geoPath().projection(d3.geoMercator().fitSize(dims, {features:selectedPolygons, type: "FeatureCollection"}));
*/
// Get a list of region names from selected polygons
var regionNames = d3.rollup(selectedPolygons, v => v[0].properties.name, k => k.properties.adm0_a3);
// Get codes for all regions
var regionCodes = Array.from(regionNames.keys());
// ***
// All possible combinations of region codes (for colouring tracks)** should be removed
var regionCombos = [];
for (var i = 0; i < regionCodes.length - 1; i++) {
// This is where you'll capture that last value
for (var j = i + 1; j < regionCodes.length; j++) {
regionCombos.push(regionCodes[i]+","+regionCodes[j]);
}
}
// Add singles to region combos
regionCombos = regionCodes.concat(regionCombos);
// *** Above should be removed to '***'
// Set colour scale based on number of colour combos
var regionColourScale = d3.scaleOrdinal().domain(['Foreign'].concat(regionCodes)).range(["#000000"].concat(customColourScale.jnnnnn.slice(0, regionCodes.length)));
// var regionColourScale = colourScale;
// Create some empty data objects to be populated
motusData.tracksByAnimal = {};
motusData.tracksByStation = {};
motusData.stationHits = {};
motusData.animalsByDayOfYear = {};
console.log("motusData.trackDataByRoute: "+ 0);
// For measuring processing time
var ts = [moment()];
// Create an empty object to hold max and min timestamps for any working dataset.
// Make a array of animal IDs for all local using 'animalsByRegions'
var allLocalAnimals = [];
for (i=0; i<regionCodes.length; i++) {
if (motusData.animalsByRegions.get(regionCodes[i])) {
allLocalAnimals = allLocalAnimals.concat(Array.from(motusData.animalsByRegions.get(regionCodes[i]).keys()));
}
}
// Get other animals that have visited the station, but were not released in that region
var allForeignAnimals = [];
motusData.tracks
.filter( d => regionStations.includes(d.recv1) || regionStations.includes(d.recv2) )
.forEach(function(d) {
allForeignAnimals = allForeignAnimals.concat(d.animal.split(',').filter(x=>!allLocalAnimals.includes(x)))
});
// Remove duplicates
allForeignAnimals = allForeignAnimals.filter(onlyUnique);
// Combine foreign and local animal arrays
var allAnimals = allForeignAnimals.concat(allLocalAnimals);
// List which regions have local animals. This is to avoid error when trying to display detection data.
var regionsWithAnimals = [];
regionCodes.forEach(function(x){ if ( motusData.animalsByRegions.get( x ) ) { regionsWithAnimals.push(x) }; });
// Empty animals filter
var regionAnimals = allAnimals;
console.log("motusFilter.trackDataByRoute[0]: " + moment().diff(ts[0]));ts.push(moment());
motusData.trackDataByRoute = [];
motusData.tracks.filter( d => d.animal.split(',').some( x => allAnimals.includes(x) ) ).forEach(function(v) {
var origin = "Foreign";
if (dtLims.min > dtStart) {dtLims.min = dtStart;}
if (dtLims.max < dtEnd) {dtLims.max = dtEnd;}
var selectedRecv1 = regionStations.includes(v.recv1);
var selectedRecv2 = regionStations.includes(v.recv2);
// Are one of the stations in the selection?
if (selectedRecv1 || selectedRecv2) {
// regionAnimals +="," + v.animal
if (selectedRecv1) {
var dtStart = moment(d3.min(v.dtStart.split(',')));
if (!timeRange.min || timeRange.min > dtStart)
timeRange.min = dtStart;
if (!timeRange.max || timeRange.max < dtStart)
timeRange.max = dtStart;
v.dtStart.split(',').forEach(function(x,i){
var doy = moment(x).dayOfYear();
motusData.animalsByDayOfYear[ doy ] = motusData.animalsByDayOfYear[ doy ] ? motusData.animalsByDayOfYear[ doy ] + "," + v.animal.split(',')[i] : v.animal.split(',')[i];
});
}
if (selectedRecv2) {
var dtEnd = moment(d3.max(v.dtEnd.split(',')));
if (!timeRange.min || timeRange.min > dtEnd)
timeRange.min = dtEnd;
if (!timeRange.max || timeRange.max < dtEnd)
timeRange.max = dtEnd;
v.dtEnd.split(',').forEach(function(x,i){
var doy = moment(x).dayOfYear();
motusData.animalsByDayOfYear[ doy ] = motusData.animalsByDayOfYear[ doy ] ? motusData.animalsByDayOfYear[ doy ] + "," + v.animal.split(',')[i] : v.animal.split(',')[i];
});
}
if (!motusData.tracksByStation[v.recv1]) {
motusData.tracksByStation[v.recv1] = [v.route];
} else {
motusData.tracksByStation[v.recv1].push(v.route);
}
if (!motusData.tracksByStation[v.recv2]) {
motusData.tracksByStation[v.recv2] = [v.route];
} else {
motusData.tracksByStation[v.recv2].push(v.route);
}
}
if (!selectedRecv1) {
}
regionCodes.forEach(function(c) {
if (
Array.from( motusData.animalsByRegions.get( c ).keys() )
.some(x => v.animal.split(',').includes(x))
) {
origin = c;
}
});
motusData.nTracks += v.animal.split(',').length;
v.animal.split(',').forEach(function(x){
if (motusData.tracksByAnimal[x]) {
motusData.tracksByAnimal[x].push(v.route);
} else {
motusData.tracksByAnimal[x] = [v.route];
}
});
motusData.trackDataByRoute.push( {
animals: v.animal,
species: v.species,
type: v.type,
recv1: v.recv1,
recv2: v.recv2,
projID: v.project,
route: v.route,
dtStart: dtStart,
dtEnd: dtEnd,
dtStartList: v.dtStart,
dtEndList: v.dtEnd,
origin: origin,
frequency: v.frequency,
coordinates: [ [v.lon1, v.lat1], [v.lon2, v.lat2]]
});
});
// console.log(motusData.stationHits);
/*Array.from(motusData.trackDataByRoute.values()).filter(d => (regionStations.includes(d.recv1) || regionStations.includes(d.recv2))).forEach(function(d){
regionAnimals += ","+d.animals;
});*/
console.log("regionAnimals: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
//regionAnimals = regionAnimals.substring(1).split(',').filter(onlyUnique);
console.log("selectedTracks: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
var selectedTracks = Array.from(regionAnimals.map(x => motusData.tracksByAnimal[x]).values()).flat();//.filter(onlyUnique);
console.log("motusMap.setVisibility(): " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
//console.log(regionAnimals);
//console.log(motusData.tracksByAnimal);
//console.log(selectedTracks);
motusMap.setVisibility();
//console.log(motusData.stations.filter(d => regionStations.includes(d.id)));
// console.log("Stations: " + regionStations.length + " - Animals: " +regionAnimals.length);
// g.attr("transform", "translate(" + -topLeft[0] + "," + -topLeft[1] + ")");
console.log("motusMap.regionPaths: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
if (!exploreProfile_hasLoaded) {
motusMap.svg.append("svg:defs").append("svg:marker")
.attr("id", "station_path")
.attr("refX", 25)
.attr("refY", 10)
.attr("markerWidth", 60)
.attr("markerHeight", 80)
.attr("viewBox", "0 0 40 30")
.attr("markerUnits","userSpaceOnUse")
.attr("orient", "auto")
.append("path")
.attr("d", icon_paths.stations)
.style('pointer-events', 'auto')
.style("stroke", "#000")
.attr("transform", "rotate(90,15,20)");
motusMap.regionPaths = motusMap.g.selectAll("regions")
// .data(selectedPolygons)
.data(motusData.polygons.features)
.enter().append("path")
.attr("d", motusMap.path)
.attr('class', 'explore-map-regions leaflet-zoom-hide')
.style('stroke', '#000')
// .style('fill', '#FFF')
.style('fill', d => motusFilter.regions.includes(d.properties.adm0_a3) ? "#FFF" : "#CCC" )
.style('stroke-width', '1px');
motusMap.g.selectAll('stations')
.data(motusData.stations.filter(d => !regionStations.includes(d.id)))
//.data(motusData.stations)
.enter().append("path")
.attr("d", motusMap.path.pointRadius(3))
.style('stroke', '#000')
.style('fill', '#FF0')
.attr('class', 'explore-map-stations explore-map-r2 leaflet-zoom-hide explore-map-stations-other')
//.style('fill', d => regionStations.includes(d.id) ? "#F00" : "#000")
.style('stroke-width', '1px')
.style('pointer-events', 'auto')
.on('mouseover', (e,d) => motusMap.dataHover(e, d, 'in', 'station'))
.on('mouseout', (e,d) => motusMap.dataHover(e, d, 'out', 'station'))
.on('click', (e,d) => motusMap.dataClick(e, d, 'station'));
var yesterday = moment().subtract(1, 'days');
motusMap.g.selectAll('stations')
.data(motusData.stations.filter(d => regionStations.includes(d.id)).sort((a, b) => d3.ascending(a.id, b.id)))
//.data(motusData.stations)
.enter().append("path")
.attr('marker-end','url(#station_path)')
.attr("d", motusMap.path.pointRadius(6))
// .attr("d", "")
.style('stroke', '#000')
.style('fill', (d) => d.dtEnd > yesterday ? '#0F0' : '#F00')
.attr('class', d => 'explore-map-stations leaflet-zoom-hide explore-map-stations-' + (d.dtEnd > yesterday ? 'active' : 'inactive') )
// .style('fill', d => regionStations.includes(d.id) ? "#F00" : "#000")
.style('stroke-width', '1px')
.style('pointer-events', 'auto')
.on('mouseover', (e,d) => motusMap.dataHover(e, d, 'in', 'station'))
.on('mouseout', (e,d) => motusMap.dataHover(e, d, 'out', 'station'))
.on('click', (e,d) => motusMap.dataClick(e, d, 'station'));
var stations_legend = mapLegend.append('svg')
.attr('class', 'map-legend-stations')
.attr('viewBox', `0 0 150 60`)
.attr('width', '150')
.attr('height', `60`);
var g = stations_legend.append("g")
.attr('class', 'map-legend-stations-active selected')
.on('click', motusMap_legendClick);
g.append("circle")
.attr("cx", "10")
.attr("cy", "15")
.attr("r", 6)
.style('stroke', '#000')
.style('fill', '#0F0')
.style('stroke-width', '1px')
.style('pointer-events', 'auto');
g.append("path")
.attr('marker-end','url(#station_path)')
.attr("d", "M10,21 L10,20")
.style('stroke', '#000')
.style('fill', '#F00')
.style('stroke-width', '1px')
.style('pointer-events', 'auto');
g.append("text")
.attr("x", "20")
.attr("y", "20")
.text("Active station");
var g = stations_legend.append("g")
.attr('class', 'map-legend-stations-inactive selected')
.on('click', motusMap_legendClick);
g.append("circle")
.attr("cx", "10")
.attr("cy", "35")
.attr("r", 6)
.style('stroke', '#000')
.style('fill', '#F00')
.style('stroke-width', '1px')
.style('pointer-events', 'auto');
g.append("path")
.attr('marker-end','url(#station_path)')
.attr("d", "M10,41 L10,40")
.style('stroke', '#000')
.style('fill', '#0F0')
.style('stroke-width', '1px')
.style('pointer-events', 'auto');
g.append("text")
.attr("x", "20")
.attr("y", "40")
.text("Inactive station");
var g = stations_legend.append("g")
.attr('class', 'map-legend-stations-other selected')
.on('click', motusMap_legendClick);
g.append("circle")
.attr("cx", "10")
.attr("cy", "55")
.attr("r", 3)
.style('stroke', '#000')
.style('fill', '#FF0')
.style('stroke-width', '1px')
.style('pointer-events', 'auto');
g.append("text")
.attr("x", "20")
.attr("y", "60")
.text("Other station");
motusMap.stationPaths = motusMap.g.selectAll('.explore-map-stations')
motusMap.regionBounds = d3.geoPath().bounds({features:selectedPolygons, type: "FeatureCollection"});
motusMap.map.fitBounds( [ [motusMap.regionBounds[0][1], motusMap.regionBounds[0][0]], [motusMap.regionBounds[1][1], motusMap.regionBounds[1][0]]]);
// alert(1);
//console.log(regionCombos);
console.log(Array.from(motusData.trackDataByRoute.values()).filter(d => selectedTracks.includes(d.route)));
setProgress(75);
console.log("motusMap.trackPaths: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
motusMap.trackPaths = motusMap.g.selectAll("tracks")
// .data(trackDataLink)
.data(Array.from(motusData.trackDataByRoute.values()).filter(d => selectedTracks.includes(d.route)))
// .data(Array.from(motusData.trackDataByRoute.values()).filter(d => (regionStations.includes(d.recv1) || regionStations.includes(d.recv2))))
.enter().append("path")
.attr('class', (d) => "explore-map-tracks explore-map-species leaflet-zoom-hide explore-map-tracks-" + ( d.origin.toLowerCase() ))
.attr("id", (d) => "track" + d.id)
.style('stroke', (d) => regionColourScale(d.origin))
// .style('stroke', (d) => (d.origin == 'local' ? colourScale.range()[1] : colourScale.range()[0] ))
.style('pointer-events', 'auto')
.style('stroke-width', '3px')
.attr("d", motusMap.path)
.on('mouseover', (e,d) => motusMap.dataHover(e, d, 'in', 'track'))
.on('mouseout', (e,d) => motusMap.dataHover(e, d, 'out', 'track'))
.on('click', (e,d) => motusMap.dataClick(e, d, 'track'));
var h = 20;
var tracks_svg = mapLegend.append("svg")
.attr('class','map-legend-tracks');
var max_length = 0;
regionColourScale.range().forEach(function(x, i) {
var g = tracks_svg.append("g");
g.append("path")
.attr("d", `M0,${10 + (i * h)} L30,${10 + (i * h)}`)
.style('stroke', x )
.style('stroke-width', '3px')
.style('pointer-events', 'auto');
var regionCode = regionColourScale.domain()[i];
var regionName = regionCode == "Foreign" ? regionCode : regionNames.get( regionColourScale.domain()[i] );
g.append("text")
.attr("x", 40)
.attr("y", h * ( i + 0.75 ) )
.text( regionName + " deployments" )
.style('pointer-events', 'auto');
var len = $("<div class='get-text-size'></div>").appendTo("body").css('font-size', '14pt').text(regionName).width();
max_length = max_length < len ? len : max_length;
g.attr("class","map-legend-tracks-" + regionCode + " selected")
.style('pointer-events', 'auto')
.on('click', motusMap_legendClick);
});
tracks_svg.attr('viewBox', `0 0 ${50 + max_length} ${regionColourScale.range().length * h}`)
.attr('width', 50 + max_length)
.attr('height', regionColourScale.range().length * h);
motusMap.map.on("zoomend", motusMap.reset);
// Reposition the SVG to cover the features.
motusMap.reset();
}
var countryByTrack = {};
setProgress(90);
console.log("regionNames.forEach[0]: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
regionNames.forEach(function(v, k) {
var stations = motusData.stationDepsByRegions.get(k);
var routes = Array.from(stations.map(x => x.deployID).values()).map(x => motusData.tracksByStation[x]).flat().filter(x=>typeof x !== 'undefined');
if (motusData.animalsByRegions.get(k)) {
var animals = allAnimals.filter((x) => motusData.animalsByRegions.get(k).get(x));
var species = Array.from( animals.map( (x) => motusData.animalsByRegions.get(k).get(x)[0].species).values() ).filter( onlyUnique );
} else {
var animals = [],
species = [];
}
// console.log(Array.from( animals.map( (x) => motusData.animalsByRegions.get(k).get(x)[0].).values() ));
routes.forEach(function(x) {
if (((typeof countryByTrack[x] === 'undefined') || (countryByTrack[x] === k))) {
countryByTrack[x] = k;
} else {
countryByTrack[x] = (countryByTrack[x] + ',' + k).split(',').sort(d3.ascending).join(',')
}
});
var status = {
tags: [ animals.length ],
species: [species.length],
projects: [Array.from(stations.map(x => x.projID).values()).filter(onlyUnique).length],
stations: [stations.length]
// lastData: [Math.round( subset[subset.length-1].lastData )],
}
if (!exploreProfile_hasLoaded) {
//console.log(status);
addExploreCard({
data: {},
id: k,
name: v,
status: status,
photo: ''
});
}
});
console.log("Map controls: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
var explore_legend = $("<div class='explore-legend' id='explore_legend'></div>");
regionColourScale.domain().forEach(function(x){
var div = explore_legend.append( "<div></div>" );
div.append( `<div class='explore-legend-icon' style='border-color:${regionColourScale(x)}'></div>` );
div.append( `${x=='Foreign'?x:regionNames.get(x)}` );
});
if (!exploreProfile_hasLoaded) {
addExploreCard({data:"add"});
//$(".explore-card-profiles-tabs").before(explore_legend);
$('#explore_map').parent().before($('#explore_card_profiles'));
$('#explore_map').before("<div class='explore-map-controls'></div>")
//$('#explore_map').before("<div class='explore-map-controls'>Map legend <input type='button' value='Hide tracks-local'><input type='button' value='Hide tracks-foreign'><input type='button' value='Hide stations'><input type='button' value='Hide regions'></div>")
console.log(mapLegend);
d3.select(".explore-map-controls").append(()=>mapLegend.node());
$(".explore-map-controls input[type=button]").click(function(){
var toggleEls = this.value.toLowerCase().split(' ');
motusMap.setVisibility(false, toggleEls);
this.value = (toggleEls[0] == 'hide' ? 'Show' : 'Hide') + " " + toggleEls[1];
});
}
$("#explore_card_profiles").toggleClass('simple-card', !detailedView);
exploreProfile_hasLoaded = true;
function motusMap_legendClick() {
var toggleEls = [
(this.classList.contains('selected') ? "hide" : "show"),
(this.classList[0].split('-')[2] + "-" + this.classList[0].split('-')[3]).toLowerCase()
];
console.log(toggleEls);
motusMap.setVisibility(false, toggleEls);
$(this).toggleClass( 'selected', !this.classList.contains('selected') );
}
/*
Stations
*/
console.log("Stations: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
// Add the card dom element to contain the chart
addExploreCard({
data:'tabs',
type:'stationHits',
header: 'Stations',
tabs: {
"Stations in this region": stationTable
//"Station detection timelines": stationTimeline
},
defaultTab: "Stations in this region",
attachEl:".explore-card-map",
attachMethod:"after"
});
setProgress(70);
/**********************************************
Animals
**********************************************/
console.log("Animals: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
// Add the card dom element to contain the chart
// addExploreCard({data:'chart', type:'tagHits'});
if (allAnimals.length > 0) {
addExploreCard({
data:'tabs',
type:'tagHits',
header: 'Detections',
tabs: {
// "Animals in this region": animalTable,
"Animal detection timeline": animalTimeline
},
defaultTab: "Animal detection timeline",
attachEl: ".explore-card-map",
attachMethod: "after"
});
addExploreCard({
data:'tabs',
type:'speciesHits',
header: 'Species',
tabs: {
"Species in this region": speciesTable
},
defaultTab: "Species in this region",
attachEl: ".explore-card-map",
attachMethod: "after"
});
// Add the timeline
// animalTimeline()
}
/*
Finish up
*/
console.log("Finish up: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
//addExploreCard({data:'custom',type:'options',html:toAppend,attachEl:".explore-card-map",attachMethod:"after"});
setCardColours( regionColourScale )
motusFilter.animals = ['all'];
motusFilter.stations = ['all'];
updateURL();
motusMap.setVisibility();
console.log("End: " + moment().diff(ts[0]) + "@" + moment().diff(ts[ts.length-1]));ts.push(moment());
setProgress(100);
/*
Functions
*/
function stationTimeline( d, {
width = 300,
height = 60,
timelineScale = d3.scaleLinear().domain([ timeRange.min, timeRange.max ]).range([ 0, width ]),
dayWidth = timelineScale( timeRange.min + (1 * 24 * 60 * 60 * 1000) ),
colourScale = d3.scaleSequential(d3.interpolateTurbo).domain([ 1, 10 ]),
timelineSVG = $("<svg width='"+width+"' height='"+height+"' style='margin:-8px 0;cursor:pointer;'></svg>")
} = {} ) {
dayWidth = dayWidth < 1 ? 1 : dayWidth;
var timeFormat = ( timeRange.range / (1000 * 60 * 60 * 24 * 365) ) * ( 300 / width ) > 2 ? "%Y" :
( ( timeRange.range / (1000 * 60 * 60 * 24 * 365) ) * ( 300 / width ) > 1 ? "%b %Y" : "%Y-%m-%d" );
var x_scale = d3.scaleTime()
.domain( [ new Date(timeRange.min), new Date(timeRange.max) ] )
.range( [0, width] );
var axis_x = d3.axisTop( x_scale )
.tickFormat( d3.timeFormat( timeFormat ) )
.ticks( Math.round( width / 75 ) );
var hasData = false;
var svg = d3.select( timelineSVG[0] )
.on("touchmove mousemove", dataHover)
.on("toucheleave mouseleave", function(e) {dataHover(e, "out");});
var stationHits = {};
d.forEach(function(v) {
var w = width * (v.dtEnd - v.dtStart) / timeRange.range;
var x = width * (v.dtStart - timeRange.min) / timeRange.range;
svg
.append('rect')
.attr('width', w)
.attr('height', height)
.attr('x', x)
.style('fill', '#CCCCCC');
var g = d3.select( timelineSVG[0] )
.append('g');
w = width * ( 24 * 60 * 60 * 3000 ) / timeRange.range;
if (typeof motusData.tracksByStation[v.deployID] !== 'undefined') {
hasData = true;
motusData.tracksByStation[v.deployID].forEach(function(x){
var datePos = ( x.split('.')[0] == v.deployID ? 'dtStart' : 'dtEnd' ) + 'List';
var trackData = motusData.trackDataByRoute.get(+x);
if (typeof trackData[datePos] !== 'undefined') {
var dates = trackData[datePos].split(',');
var data = countInstances( dates.map(k => moment(k).valueOf()) );
var spp = {};
trackData.species.split(',').forEach(function(k, i){
// if ( spp.length != 0 && typeof data[2] !== 'undefined' && data[2][data[2].length - 1] == dates[i]) {
if ( typeof data[2] !== 'undefined' && data[0][data[2].length - 1] == dates[i]) {
data[2][i].push(k);
} else if ( typeof data[2] !== 'undefined' ) {
data[2].push([k]);
} else {
data[2] = [[k]];
}
});
var date_str;
for (var i = 0; i < data[0].length; i++) {
date_str = new Date( data[0][i] ).toISOString().substr(0, 10);
if ( typeof stationHits[ date_str ] !== 'undefined' ) {
stationHits[ date_str ].count += data[1][i];
stationHits[ date_str ].species = stationHits[ date_str ].species.concat(data[2][i]).filter(onlyUnique);
} else {
stationHits[ date_str ] = {date: data[0][i], count: data[1][i], species: data[2][i].filter(onlyUnique)};
}
}
}
});
} else {
// no data
}
});
var maxCount = d3.max(Object.values(stationHits), x => x.count);
var maxSpp = d3.max(Object.values(stationHits), x => x.species.length);
var g = d3.select( timelineSVG[0] )
.append('g');
g.selectAll('rect')
.data(Object.values(stationHits))
.enter()
.append('rect')
//.attr('width', 3 ) // Three days
.attr('width', dayWidth ) // one day
.attr('height', dataHeight )
.attr('x', (x) => timelineScale(x.date) )
.attr('fill', (x) => colourScale(x.species.length) )
.attr('transform', translate);
// .attr('class', 'hover-data')
// .on('mouseover', (e,d) => dataHover(e, d, 'in'))
// .on('mouseout', (e,d) => dataHover(e, d, 'out'));
var tooltip_data_bar = d3.select( timelineSVG[0] )
.append('g')
.style('display', 'none');
tooltip_data_bar.append('rect')
.attr('width', dayWidth)
.attr('height', height)
.attr('fill', '#000')
.attr('x', 0)
.attr('y', 0);
function bisect(mx) {
const bisect = d3.bisector( d => d.date ).left;
const date = x_scale.invert(mx);
const index = bisect(Object.values(stationHits), date, 1);
const a = Object.values(stationHits)[index - 1];
const b = Object.values(stationHits)[index];
return b && (date - a.date > b.date - date) ? b : a;
}
function dataHover(e, dir = 'in') {
// from: https://observablehq.com/@d3/line-chart-with-tooltip
if (dir == 'in') {
const x_pos = d3.pointer(e, this)[0];
const date = x_scale.invert( x_pos ).toISOString().substr(0, 10);
const d = stationHits[ date ];
$('.tooltip').html(
"<big>"+
( date )+
"</big>"+
(d ? `</br>${d.count} animals</br> ${d.species.length} species`: "") +
"</div>"
);
if (e.pageX + 15 + $('.tooltip').outerWidth() > $(window).width()) {
$('.tooltip').css({top:e.pageY - 10, left:e.pageX - $('.tooltip').outerWidth() - 15});
} else {
$('.tooltip').css({top:e.pageY - 10, left:e.pageX + 15});
}
tooltip_data_bar.attr('transform', `translate(${x_pos},0)`).style('display', null)
$('.tooltip:hidden').show();
} else {
$('.tooltip').hide();
tooltip_data_bar.style('display', 'none');
}
/*
if (dir == 'in') {
$('.tooltip').html(
"<big>"+
(moment(d.date).toISOString().substr(0,10))+
"</big></br>"+
d.count+
" animals</br>"+
d.species.length+
" species"+
"</div>"
);
if (e.pageX + 15 + $('.tooltip').outerWidth() > $(window).width()) {
$('.tooltip').css({top:e.pageY - 10, left:e.pageX - $('.tooltip').outerWidth() - 15});
} else {
$('.tooltip').css({top:e.pageY - 10, left:e.pageX + 15});
}
$('.tooltip:hidden').show();
} else if (dir == 'out') {
$('.tooltip').hide();
}
*/}
function dataHeight(x) {
return 2 + ( ( height - 25 ) * x.count / maxCount);
}
function translate(x) {
return "translate(0, " + (((height - 25) - dataHeight(x))/2) + ")";
}
if (!hasData) {
d3.select( timelineSVG[0] )
.append('text')
.attr('dy', '.3em')
.attr('text-anchor', 'middle')
.attr('x', (width / 2) )
.attr('y', (height / 2) )
.style('font-weight', '600')
.text("NO DETECTIONS");
}
d3.select( timelineSVG[0] )
.append( 'g' )
.attr('transform', 'translate(0 60)')
.call(axis_x);
return timelineSVG[0];
}
function stationTable( cardID ) {
$("#explore_card_stationHits .explore-card-stationHits-timeline").parent().hide();
if ($(`#explore_card_${cardID} .explore-card-${cardID}-table`).length == 0) {
//$("#explore_card_stationHits .explore-card-header").text("Stations in th" + ( motusFilter.regions.length > 1 ? "ese" : "is") + " region" + ( motusFilter.regions.length > 1 ? "s" : ""));
var headers = ["Station Name", "Start Date", "Status", "Animals", "Species"];
$(`#explore_card_${cardID}`)
.append( $("<table></table>")
.attr('class', `explore-card-${cardID}-table`)
.append( $('<thead></thead>')
.append( $('<tr></tr>') )
)
.append( $('<tbody></tbody>') )
)
//headers.forEach( x => $(`#explore_card_${cardID} .explore-card-${cardID}-table thead tr`).append( $('<th></th>').text(x) ) );
timeRange = {min: timeRange.min.valueOf(), max: timeRange.max.valueOf()}
timeRange.range = timeRange.max - timeRange.min;
motusData.selectedStations = Array.from(
d3.rollup(
motusData.stationDeps.filter(
x => regionStations.includes( x.deployID )
),
v => ({
id: ( Array.from( v.map( d => d.deployID ).values() ) ).join(','),
name: v[0].name,
dtStart: d3.min(v, d => d.dtStart),
dtEnd: d3.max(v, d => d.dtEnd),
nAnimals: v.map(x => x.animals.split(';')).flat().filter(onlyUnique).length,
nSpp: v.map(x => x.species.split(';')).flat().filter(onlyUnique).length,
country: v[0].country
}),
d => d.name
).values()
);
motusData.selectedStationDeployments = d3.group(
motusData.stationDeps.filter(
x => regionStations.includes( x.deployID )
),
d => d.name
);
console.log(motusData.stationDeps.filter(
x => regionStations.includes( x.deployID )
));
var totalAnimals = d3.max(motusData.selectedStations, v => v.nAnimals);
console.log(totalAnimals);
var tableDom = motusData.selectedStations.length > 10 ? "ipt" : "t";
$(`#explore_card_${cardID} .explore-card-${cardID}-table`).DataTable({
data: motusData.selectedStations,
columns: [
{className: "explore-table-expandRow", data: null, orderable: false, defaultContent: ""},
{data: "name", title: "Station", "createdCell": function(td, cdata, rdata){
$(td).html(
`<div class='explore-card-table-legend-icon' style='border-color:${regionColourScale(rdata.country)}'></div>`+
`<a href='javascript:void(0);' onclick='viewProfile("stations", ${rdata.deployID});'>${rdata.name}</a>`
);
}},
{data: "dtStart", title: "Station", "createdCell": function(td, cdata, rdata){
$(td).html( cdata );
}},
{data: "dtEnd", title: "Station", "createdCell": function(td, cdata, rdata){
$(td).html( `${(moment().diff(moment(cdata), 'day') < 1 ? "Active" : "Ended on:<br/>" + cdata )}` );
}},
{data: "nAnimals", title: "Number of Animals"},
{data: "nSpp", title: "Number of Species"}
],
dom: tableDom,
autoWidth: false
}).on('draw.dt', function(){
$(`#explore_card_${cardID} .explore-card-${cardID}-table`).DataTable().rows().every(function(){
this.child( stationTimeline( motusData.selectedStationDeployments.get( this.data().name ), { width: $(this.node() ).width() - 20 } ) ).show();
this.nodes().to$().addClass('shown');
});
$(`#explore_card_${cardID} .explore-card-${cardID}-table tbody`).on('click', `td.explore-table-expandRow`, function(){
var tr = $(this).closest('tr');
var row = $(this).closest('table').DataTable().row( tr );
if ( row.child.isShown() ) {