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Date Time Name Level Text Headers Captions Total
2018-10-24 15:44:04 docs/thesis.tex Document 155 28 0 183
2018-10-24 15:44:04 Introduction Chapter 0 1 0 1
2018-10-24 15:44:04 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-10-24 15:44:04 Simulating scRNA-seq data Chapter 0 3 0 3
2018-10-24 15:44:04 Visualising clustering across resolutions Chapter 0 4 0 4
2018-10-24 15:44:04 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-10-24 15:44:04 Conclusion Chapter 0 1 0 1
2018-10-24 15:44:04 References Chapter 0 1 0 1
2018-10-30 15:10:16 docs/thesis.tex Document 155 31 0 186
2018-10-30 15:10:16 Introduction Chapter 0 1 0 1
2018-10-30 15:10:16 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-10-30 15:10:16 Simulating scRNA-seq data Chapter 0 6 0 6
2018-10-30 15:10:16 Introduction Section 0 1 0 1
2018-10-30 15:10:16 Splatter publication Section 0 2 0 2
2018-10-30 15:10:16 Visualising clustering across resolutions Chapter 0 4 0 4
2018-10-30 15:10:16 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-10-30 15:10:16 Conclusion Chapter 0 1 0 1
2018-10-30 15:10:16 References Chapter 0 1 0 1
2018-11-07 09:42:37 docs/thesis.tex Document 253 89 0 342
2018-11-07 09:42:37 Introduction Chapter 98 59 0 157
2018-11-07 09:42:37 RNA sequencing Section 21 12 0 33
2018-11-07 09:42:37 Capture and reverse transcription Subsection 4 4 0 8
2018-11-07 09:42:37 High-throughput sequencing Subsection 5 2 0 7
2018-11-07 09:42:37 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-07 09:42:37 Single-cell capture technologies Section 17 12 0 29
2018-11-07 09:42:37 Droplet based cell capture Subsection 4 4 0 8
2018-11-07 09:42:37 Unique Molecular Identifiers Subsection 4 3 0 7
2018-11-07 09:42:37 Recent advances Subsection 6 2 0 8
2018-11-07 09:42:37 Features of single-cell RNA-seq data Section 8 5 0 13
2018-11-07 09:42:37 Analysing scRNA-seq data Section 34 18 0 52
2018-11-07 09:42:37 Pre-processing and quality control Subsection 13 4 0 17
2018-11-07 09:42:37 Integrating multiple datasets Subsection 5 3 0 8
2018-11-07 09:42:37 Grouping cells Subsection 4 2 0 6
2018-11-07 09:42:37 Ordering cells Subsection 4 2 0 6
2018-11-07 09:42:37 Gene detection and interpretation Subsection 8 4 0 12
2018-11-07 09:42:37 Kidney development Section 18 11 0 29
2018-11-07 09:42:37 Structure and function Subsection 7 3 0 10
2018-11-07 09:42:37 Stages of development Subsection 3 3 0 6
2018-11-07 09:42:37 Growing kidney organoids Subsection 8 3 0 11
2018-11-07 09:42:37 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-07 09:42:37 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-07 09:42:37 Introduction Section 0 1 0 1
2018-11-07 09:42:37 Splatter publication Section 0 2 0 2
2018-11-07 09:42:37 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-07 09:42:37 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-07 09:42:37 Conclusion Chapter 0 1 0 1
2018-11-07 09:42:37 References Chapter 0 1 0 1
2018-11-08 16:11:42 docs/thesis.tex Document 593 89 0 682
2018-11-08 16:11:42 Introduction Chapter 438 59 0 497
2018-11-08 16:11:42 RNA sequencing Section 21 12 0 33
2018-11-08 16:11:42 Capture and reverse transcription Subsection 4 4 0 8
2018-11-08 16:11:42 High-throughput sequencing Subsection 5 2 0 7
2018-11-08 16:11:42 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-08 16:11:42 Single-cell capture technologies Section 357 12 0 369
2018-11-08 16:11:42 Droplet based cell capture Subsection 4 4 0 8
2018-11-08 16:11:42 Unique Molecular Identifiers Subsection 4 3 0 7
2018-11-08 16:11:42 Recent advances Subsection 6 2 0 8
2018-11-08 16:11:42 Features of single-cell RNA-seq data Section 8 5 0 13
2018-11-08 16:11:42 Analysing scRNA-seq data Section 34 18 0 52
2018-11-08 16:11:42 Pre-processing and quality control Subsection 13 4 0 17
2018-11-08 16:11:42 Integrating multiple datasets Subsection 5 3 0 8
2018-11-08 16:11:42 Grouping cells Subsection 4 2 0 6
2018-11-08 16:11:42 Ordering cells Subsection 4 2 0 6
2018-11-08 16:11:42 Gene detection and interpretation Subsection 8 4 0 12
2018-11-08 16:11:42 Kidney development Section 18 11 0 29
2018-11-08 16:11:42 Structure and function Subsection 7 3 0 10
2018-11-08 16:11:42 Stages of development Subsection 3 3 0 6
2018-11-08 16:11:42 Growing kidney organoids Subsection 8 3 0 11
2018-11-08 16:11:42 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-08 16:11:42 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-08 16:11:42 Introduction Section 0 1 0 1
2018-11-08 16:11:42 Splatter publication Section 0 2 0 2
2018-11-08 16:11:42 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-08 16:11:42 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-08 16:11:42 Conclusion Chapter 0 1 0 1
2018-11-08 16:11:42 References Chapter 0 1 0 1
2018-11-23 18:50:40 docs/thesis.tex Document 1623 89 0 1712
2018-11-23 18:50:40 Introduction Chapter 1468 59 0 1527
2018-11-23 18:50:40 RNA sequencing Section 21 12 0 33
2018-11-23 18:50:40 Capture and reverse transcription Subsection 4 4 0 8
2018-11-23 18:50:40 High-throughput sequencing Subsection 5 2 0 7
2018-11-23 18:50:40 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-23 18:50:40 Single-cell capture technologies Section 1387 12 0 1399
2018-11-23 18:50:40 Droplet based cell capture Subsection 311 4 0 315
2018-11-23 18:50:40 Unique Molecular Identifiers Subsection 343 3 0 346
2018-11-23 18:50:40 Recent advances Subsection 390 2 0 392
2018-11-23 18:50:40 Features of single-cell RNA-seq data Section 8 5 0 13
2018-11-23 18:50:40 Analysing scRNA-seq data Section 34 18 0 52
2018-11-23 18:50:40 Pre-processing and quality control Subsection 13 4 0 17
2018-11-23 18:50:40 Integrating multiple datasets Subsection 5 3 0 8
2018-11-23 18:50:40 Grouping cells Subsection 4 2 0 6
2018-11-23 18:50:40 Ordering cells Subsection 4 2 0 6
2018-11-23 18:50:40 Gene detection and interpretation Subsection 8 4 0 12
2018-11-23 18:50:40 Kidney development Section 18 11 0 29
2018-11-23 18:50:40 Structure and function Subsection 7 3 0 10
2018-11-23 18:50:40 Stages of development Subsection 3 3 0 6
2018-11-23 18:50:40 Growing kidney organoids Subsection 8 3 0 11
2018-11-23 18:50:40 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-23 18:50:40 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-23 18:50:40 Introduction Section 0 1 0 1
2018-11-23 18:50:40 Splatter publication Section 0 2 0 2
2018-11-23 18:50:40 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-23 18:50:40 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-23 18:50:40 Conclusion Chapter 0 1 0 1
2018-11-23 18:50:40 References Chapter 0 1 0 1
2018-11-23 19:16:54 docs/thesis.tex Document 1882 91 0 1973
2018-11-23 19:16:54 Introduction Chapter 1727 61 0 1788
2018-11-23 19:16:54 RNA sequencing Section 21 12 0 33
2018-11-23 19:16:54 Capture and reverse transcription Subsection 4 4 0 8
2018-11-23 19:16:54 High-throughput sequencing Subsection 5 2 0 7
2018-11-23 19:16:54 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-23 19:16:54 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-23 19:16:54 Single-cell capture technologies Section 1387 12 0 1399
2018-11-23 19:16:54 Droplet based cell capture Subsection 311 4 0 315
2018-11-23 19:16:54 Unique Molecular Identifiers Subsection 343 3 0 346
2018-11-23 19:16:54 Recent advances Subsection 390 2 0 392
2018-11-23 19:16:54 Features of single-cell RNA-seq data Section 9 5 0 14
2018-11-23 19:16:54 Analysing scRNA-seq data Section 34 18 0 52
2018-11-23 19:16:54 Pre-processing and quality control Subsection 13 4 0 17
2018-11-23 19:16:54 Integrating multiple datasets Subsection 5 3 0 8
2018-11-23 19:16:54 Grouping cells Subsection 4 2 0 6
2018-11-23 19:16:54 Ordering cells Subsection 4 2 0 6
2018-11-23 19:16:54 Gene detection and interpretation Subsection 8 4 0 12
2018-11-23 19:16:54 Kidney development Section 18 11 0 29
2018-11-23 19:16:54 Structure and function Subsection 7 3 0 10
2018-11-23 19:16:54 Stages of development Subsection 3 3 0 6
2018-11-23 19:16:54 Growing kidney organoids Subsection 8 3 0 11
2018-11-23 19:16:54 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-23 19:16:54 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-23 19:16:54 Introduction Section 0 1 0 1
2018-11-23 19:16:54 Splatter publication Section 0 2 0 2
2018-11-23 19:16:54 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-23 19:16:54 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-23 19:16:54 Conclusion Chapter 0 1 0 1
2018-11-23 19:16:54 References Chapter 0 1 0 1
2018-11-24 10:42:20 docs/thesis.tex Document 2586 86 0 2672
2018-11-24 10:42:20 Introduction Chapter 2431 56 0 2487
2018-11-24 10:42:20 RNA sequencing Section 21 12 0 33
2018-11-24 10:42:20 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 10:42:20 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 10:42:20 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 10:42:20 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 10:42:20 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 10:42:20 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 10:42:20 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 10:42:20 Recent advances Subsection 390 2 0 392
2018-11-24 10:42:20 Analysing scRNA-seq data Section 744 18 0 762
2018-11-24 10:42:20 Pre-processing and quality control Subsection 13 4 0 17
2018-11-24 10:42:20 Integrating multiple datasets Subsection 5 3 0 8
2018-11-24 10:42:20 Grouping cells Subsection 4 2 0 6
2018-11-24 10:42:20 Ordering cells Subsection 4 2 0 6
2018-11-24 10:42:20 Gene detection and interpretation Subsection 8 4 0 12
2018-11-24 10:42:20 Kidney development Section 18 11 0 29
2018-11-24 10:42:20 Structure and function Subsection 7 3 0 10
2018-11-24 10:42:20 Stages of development Subsection 3 3 0 6
2018-11-24 10:42:20 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 10:42:20 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 10:42:20 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 10:42:20 Introduction Section 0 1 0 1
2018-11-24 10:42:20 Splatter publication Section 0 2 0 2
2018-11-24 10:42:20 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 10:42:20 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 10:42:20 Conclusion Chapter 0 1 0 1
2018-11-24 10:42:20 References Chapter 0 1 0 1
2018-11-24 11:36:32 docs/thesis.tex Document 3146 86 0 3232
2018-11-24 11:36:32 Introduction Chapter 2991 56 0 3047
2018-11-24 11:36:32 RNA sequencing Section 21 12 0 33
2018-11-24 11:36:32 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 11:36:32 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 11:36:32 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 11:36:32 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 11:36:32 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 11:36:32 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 11:36:32 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 11:36:32 Recent advances Subsection 390 2 0 392
2018-11-24 11:36:32 Analysing scRNA-seq data Section 1304 18 0 1322
2018-11-24 11:36:32 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 11:36:32 Integrating multiple datasets Subsection 5 3 0 8
2018-11-24 11:36:32 Grouping cells Subsection 4 2 0 6
2018-11-24 11:36:32 Ordering cells Subsection 4 2 0 6
2018-11-24 11:36:32 Gene detection and interpretation Subsection 8 4 0 12
2018-11-24 11:36:32 Kidney development Section 18 11 0 29
2018-11-24 11:36:32 Structure and function Subsection 7 3 0 10
2018-11-24 11:36:32 Stages of development Subsection 3 3 0 6
2018-11-24 11:36:32 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 11:36:32 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 11:36:32 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 11:36:32 Introduction Section 0 1 0 1
2018-11-24 11:36:32 Splatter publication Section 0 2 0 2
2018-11-24 11:36:32 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 11:36:32 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 11:36:32 Conclusion Chapter 0 1 0 1
2018-11-24 11:36:32 References Chapter 0 1 0 1
2018-11-24 12:09:17 docs/thesis.tex Document 3646 86 0 3732
2018-11-24 12:09:17 Introduction Chapter 3491 56 0 3547
2018-11-24 12:09:17 RNA sequencing Section 21 12 0 33
2018-11-24 12:09:17 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 12:09:17 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 12:09:17 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 12:09:17 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 12:09:17 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 12:09:17 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 12:09:17 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 12:09:17 Recent advances Subsection 390 2 0 392
2018-11-24 12:09:17 Analysing scRNA-seq data Section 1804 18 0 1822
2018-11-24 12:09:17 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 12:09:17 Normalisation and integration Subsection 502 3 0 505
2018-11-24 12:09:17 Grouping cells Subsection 6 2 0 8
2018-11-24 12:09:17 Ordering cells Subsection 5 2 0 7
2018-11-24 12:09:17 Gene detection and interpretation Subsection 8 4 0 12
2018-11-24 12:09:17 Kidney development Section 18 11 0 29
2018-11-24 12:09:17 Structure and function Subsection 7 3 0 10
2018-11-24 12:09:17 Stages of development Subsection 3 3 0 6
2018-11-24 12:09:17 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 12:09:17 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 12:09:17 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 12:09:17 Introduction Section 0 1 0 1
2018-11-24 12:09:17 Splatter publication Section 0 2 0 2
2018-11-24 12:09:17 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 12:09:17 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 12:09:17 Conclusion Chapter 0 1 0 1
2018-11-24 12:09:17 References Chapter 0 1 0 1
2018-11-24 13:49:28 docs/thesis.tex Document 4032 86 0 4118
2018-11-24 13:49:28 Introduction Chapter 3877 56 0 3933
2018-11-24 13:49:28 RNA sequencing Section 21 12 0 33
2018-11-24 13:49:28 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 13:49:28 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 13:49:28 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 13:49:28 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 13:49:28 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 13:49:28 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 13:49:28 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 13:49:28 Recent advances Subsection 390 2 0 392
2018-11-24 13:49:28 Analysing scRNA-seq data Section 2190 18 0 2208
2018-11-24 13:49:28 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 13:49:28 Normalisation and integration Subsection 506 3 0 509
2018-11-24 13:49:28 Grouping cells Subsection 388 2 0 390
2018-11-24 13:49:28 Ordering cells Subsection 5 2 0 7
2018-11-24 13:49:28 Gene detection and interpretation Subsection 8 4 0 12
2018-11-24 13:49:28 Kidney development Section 18 11 0 29
2018-11-24 13:49:28 Structure and function Subsection 7 3 0 10
2018-11-24 13:49:28 Stages of development Subsection 3 3 0 6
2018-11-24 13:49:28 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 13:49:28 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 13:49:28 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 13:49:28 Introduction Section 0 1 0 1
2018-11-24 13:49:28 Splatter publication Section 0 2 0 2
2018-11-24 13:49:28 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 13:49:28 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 13:49:28 Conclusion Chapter 0 1 0 1
2018-11-24 13:49:28 References Chapter 0 1 0 1
2018-11-24 14:11:06 docs/thesis.tex Document 4268 88 0 4356
2018-11-24 14:11:06 Introduction Chapter 4113 58 0 4171
2018-11-24 14:11:06 RNA sequencing Section 21 12 0 33
2018-11-24 14:11:06 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 14:11:06 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 14:11:06 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 14:11:06 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 14:11:06 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 14:11:06 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 14:11:06 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 14:11:06 Recent advances Subsection 390 2 0 392
2018-11-24 14:11:06 Analysing scRNA-seq data Section 2426 20 0 2446
2018-11-24 14:11:06 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 14:11:06 Normalisation and integration Subsection 509 3 0 512
2018-11-24 14:11:06 Grouping cells Subsection 388 2 0 390
2018-11-24 14:11:06 Ordering cells Subsection 231 2 0 233
2018-11-24 14:11:06 Gene detection and interpretation Subsection 8 4 0 12
2018-11-24 14:11:06 Alternative analyses Subsection 7 2 0 9
2018-11-24 14:11:06 Kidney development Section 18 11 0 29
2018-11-24 14:11:06 Structure and function Subsection 7 3 0 10
2018-11-24 14:11:06 Stages of development Subsection 3 3 0 6
2018-11-24 14:11:06 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 14:11:06 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 14:11:06 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 14:11:06 Introduction Section 0 1 0 1
2018-11-24 14:11:06 Splatter publication Section 0 2 0 2
2018-11-24 14:11:06 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 14:11:06 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 14:11:06 Conclusion Chapter 0 1 0 1
2018-11-24 14:11:06 References Chapter 0 1 0 1
2018-11-24 14:42:34 docs/thesis.tex Document 4754 88 0 4842
2018-11-24 14:42:34 Introduction Chapter 4599 58 0 4657
2018-11-24 14:42:34 RNA sequencing Section 21 12 0 33
2018-11-24 14:42:34 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 14:42:34 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 14:42:34 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 14:42:34 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 14:42:34 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 14:42:34 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 14:42:34 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 14:42:34 Recent advances Subsection 390 2 0 392
2018-11-24 14:42:34 Analysing scRNA-seq data Section 2912 20 0 2932
2018-11-24 14:42:34 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 14:42:34 Normalisation and integration Subsection 509 3 0 512
2018-11-24 14:42:34 Grouping cells Subsection 388 2 0 390
2018-11-24 14:42:34 Ordering cells Subsection 231 2 0 233
2018-11-24 14:42:34 Gene detection and interpretation Subsection 494 4 0 498
2018-11-24 14:42:34 Alternative analyses Subsection 7 2 0 9
2018-11-24 14:42:34 Kidney development Section 18 11 0 29
2018-11-24 14:42:34 Structure and function Subsection 7 3 0 10
2018-11-24 14:42:34 Stages of development Subsection 3 3 0 6
2018-11-24 14:42:34 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 14:42:34 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 14:42:34 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 14:42:34 Introduction Section 0 1 0 1
2018-11-24 14:42:34 Splatter publication Section 0 2 0 2
2018-11-24 14:42:34 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 14:42:34 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 14:42:34 Conclusion Chapter 0 1 0 1
2018-11-24 14:42:34 References Chapter 0 1 0 1
2018-11-24 15:11:29 docs/thesis.tex Document 4982 88 0 5070
2018-11-24 15:11:29 Introduction Chapter 4827 58 0 4885
2018-11-24 15:11:29 RNA sequencing Section 21 12 0 33
2018-11-24 15:11:29 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 15:11:29 High-throughput sequencing Subsection 5 2 0 7
2018-11-24 15:11:29 Analysis of RNA-seq data Subsection 8 4 0 12
2018-11-24 15:11:29 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 15:11:29 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 15:11:29 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 15:11:29 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 15:11:29 Recent advances Subsection 390 2 0 392
2018-11-24 15:11:29 Analysing scRNA-seq data Section 3140 20 0 3160
2018-11-24 15:11:29 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 15:11:29 Normalisation and integration Subsection 509 3 0 512
2018-11-24 15:11:29 Grouping cells Subsection 388 2 0 390
2018-11-24 15:11:29 Ordering cells Subsection 349 2 0 351
2018-11-24 15:11:29 Gene detection and interpretation Subsection 494 4 0 498
2018-11-24 15:11:29 Alternative analyses Subsection 115 2 0 117
2018-11-24 15:11:29 Kidney development Section 18 11 0 29
2018-11-24 15:11:29 Structure and function Subsection 7 3 0 10
2018-11-24 15:11:29 Stages of development Subsection 3 3 0 6
2018-11-24 15:11:29 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 15:11:29 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 15:11:29 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 15:11:29 Introduction Section 0 1 0 1
2018-11-24 15:11:29 Splatter publication Section 0 2 0 2
2018-11-24 15:11:29 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 15:11:29 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 15:11:29 Conclusion Chapter 0 1 0 1
2018-11-24 15:11:29 References Chapter 0 1 0 1
2018-11-24 17:12:17 docs/thesis.tex Document 5675 88 0 5763
2018-11-24 17:12:17 Introduction Chapter 5520 58 0 5578
2018-11-24 17:12:17 RNA sequencing Section 242 12 0 254
2018-11-24 17:12:17 Capture and reverse transcription Subsection 4 4 0 8
2018-11-24 17:12:17 High-throughput sequencing Subsection 7 2 0 9
2018-11-24 17:12:17 Analysis of RNA-seq data Subsection 11 4 0 15
2018-11-24 17:12:17 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 17:12:17 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 17:12:17 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 17:12:17 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 17:12:17 Recent advances Subsection 390 2 0 392
2018-11-24 17:12:17 Analysing scRNA-seq data Section 3140 20 0 3160
2018-11-24 17:12:17 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 17:12:17 Normalisation and integration Subsection 509 3 0 512
2018-11-24 17:12:17 Grouping cells Subsection 388 2 0 390
2018-11-24 17:12:17 Ordering cells Subsection 349 2 0 351
2018-11-24 17:12:17 Gene detection and interpretation Subsection 494 4 0 498
2018-11-24 17:12:17 Alternative analyses Subsection 115 2 0 117
2018-11-24 17:12:17 Kidney development Section 18 11 0 29
2018-11-24 17:12:17 Structure and function Subsection 7 3 0 10
2018-11-24 17:12:17 Stages of development Subsection 3 3 0 6
2018-11-24 17:12:17 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 17:12:17 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 17:12:17 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 17:12:17 Introduction Section 0 1 0 1
2018-11-24 17:12:17 Splatter publication Section 0 2 0 2
2018-11-24 17:12:17 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 17:12:17 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 17:12:17 Conclusion Chapter 0 1 0 1
2018-11-24 17:12:17 References Chapter 0 1 0 1
2018-11-24 17:57:35 docs/thesis.tex Document 6091 86 0 6177
2018-11-24 17:57:35 Introduction Chapter 5936 56 0 5992
2018-11-24 17:57:35 RNA sequencing Section 655 10 0 665
2018-11-24 17:57:35 Library preparation Subsection 417 2 0 419
2018-11-24 17:57:35 High-throughput sequencing Subsection 7 2 0 9
2018-11-24 17:57:35 Analysis of RNA-seq data Subsection 11 4 0 15
2018-11-24 17:57:35 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 17:57:35 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 17:57:35 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 17:57:35 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 17:57:35 Recent advances Subsection 390 2 0 392
2018-11-24 17:57:35 Analysing scRNA-seq data Section 3142 20 0 3162
2018-11-24 17:57:35 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 17:57:35 Normalisation and integration Subsection 509 3 0 512
2018-11-24 17:57:35 Grouping cells Subsection 388 2 0 390
2018-11-24 17:57:35 Ordering cells Subsection 349 2 0 351
2018-11-24 17:57:35 Gene detection and interpretation Subsection 494 4 0 498
2018-11-24 17:57:35 Alternative analyses Subsection 115 2 0 117
2018-11-24 17:57:35 Kidney development Section 18 11 0 29
2018-11-24 17:57:35 Structure and function Subsection 7 3 0 10
2018-11-24 17:57:35 Stages of development Subsection 3 3 0 6
2018-11-24 17:57:35 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 17:57:35 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 17:57:35 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 17:57:35 Introduction Section 0 1 0 1
2018-11-24 17:57:35 Splatter publication Section 0 2 0 2
2018-11-24 17:57:35 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 17:57:35 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 17:57:35 Conclusion Chapter 0 1 0 1
2018-11-24 17:57:35 References Chapter 0 1 0 1
2018-11-24 18:46:15 docs/thesis.tex Document 6330 86 0 6416
2018-11-24 18:46:15 Introduction Chapter 6175 56 0 6231
2018-11-24 18:46:15 RNA sequencing Section 894 10 0 904
2018-11-24 18:46:15 Library preparation Subsection 417 2 0 419
2018-11-24 18:46:15 High-throughput sequencing Subsection 246 2 0 248
2018-11-24 18:46:15 Analysis of RNA-seq data Subsection 11 4 0 15
2018-11-24 18:46:15 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 18:46:15 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 18:46:15 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 18:46:15 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 18:46:15 Recent advances Subsection 390 2 0 392
2018-11-24 18:46:15 Analysing scRNA-seq data Section 3142 20 0 3162
2018-11-24 18:46:15 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 18:46:15 Normalisation and integration Subsection 509 3 0 512
2018-11-24 18:46:15 Grouping cells Subsection 388 2 0 390
2018-11-24 18:46:15 Ordering cells Subsection 349 2 0 351
2018-11-24 18:46:15 Gene detection and interpretation Subsection 494 4 0 498
2018-11-24 18:46:15 Alternative analyses Subsection 115 2 0 117
2018-11-24 18:46:15 Kidney development Section 18 11 0 29
2018-11-24 18:46:15 Structure and function Subsection 7 3 0 10
2018-11-24 18:46:15 Stages of development Subsection 3 3 0 6
2018-11-24 18:46:15 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 18:46:15 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 18:46:15 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 18:46:15 Introduction Section 0 1 0 1
2018-11-24 18:46:15 Splatter publication Section 0 2 0 2
2018-11-24 18:46:15 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 18:46:15 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 18:46:15 Conclusion Chapter 0 1 0 1
2018-11-24 18:46:15 References Chapter 0 1 0 1
2018-11-24 19:20:35 docs/thesis.tex Document 6814 86 0 6900
2018-11-24 19:20:35 Introduction Chapter 6659 56 0 6715
2018-11-24 19:20:35 RNA sequencing Section 1376 10 0 1386
2018-11-24 19:20:35 Library preparation Subsection 417 2 0 419
2018-11-24 19:20:35 High-throughput sequencing Subsection 246 2 0 248
2018-11-24 19:20:35 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-24 19:20:35 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-24 19:20:35 Single-cell capture technologies Section 1390 12 0 1402
2018-11-24 19:20:35 Droplet based cell capture Subsection 311 4 0 315
2018-11-24 19:20:35 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-24 19:20:35 Recent advances Subsection 390 2 0 392
2018-11-24 19:20:35 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-24 19:20:35 Pre-processing and quality control Subsection 544 4 0 548
2018-11-24 19:20:35 Normalisation and integration Subsection 509 3 0 512
2018-11-24 19:20:35 Grouping cells Subsection 388 2 0 390
2018-11-24 19:20:35 Ordering cells Subsection 349 2 0 351
2018-11-24 19:20:35 Gene detection and interpretation Subsection 496 4 0 500
2018-11-24 19:20:35 Alternative analyses Subsection 115 2 0 117
2018-11-24 19:20:35 Kidney development Section 18 11 0 29
2018-11-24 19:20:35 Structure and function Subsection 7 3 0 10
2018-11-24 19:20:35 Stages of development Subsection 3 3 0 6
2018-11-24 19:20:35 Growing kidney organoids Subsection 8 3 0 11
2018-11-24 19:20:35 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-24 19:20:35 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-24 19:20:35 Introduction Section 0 1 0 1
2018-11-24 19:20:35 Splatter publication Section 0 2 0 2
2018-11-24 19:20:35 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-24 19:20:35 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-24 19:20:35 Conclusion Chapter 0 1 0 1
2018-11-24 19:20:35 References Chapter 0 1 0 1
2018-11-25 10:36:40 docs/thesis.tex Document 7354 86 0 7440
2018-11-25 10:36:40 Introduction Chapter 7199 56 0 7255
2018-11-25 10:36:40 RNA sequencing Section 1376 10 0 1386
2018-11-25 10:36:40 Library preparation Subsection 417 2 0 419
2018-11-25 10:36:40 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 10:36:40 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 10:36:40 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 10:36:40 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 10:36:40 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 10:36:40 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 10:36:40 Recent advances Subsection 390 2 0 392
2018-11-25 10:36:40 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 10:36:40 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 10:36:40 Normalisation and integration Subsection 509 3 0 512
2018-11-25 10:36:40 Grouping cells Subsection 388 2 0 390
2018-11-25 10:36:40 Ordering cells Subsection 349 2 0 351
2018-11-25 10:36:40 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 10:36:40 Alternative analyses Subsection 115 2 0 117
2018-11-25 10:36:40 Kidney development Section 558 11 0 569
2018-11-25 10:36:40 Structure and function Subsection 547 3 0 550
2018-11-25 10:36:40 Stages of development Subsection 3 3 0 6
2018-11-25 10:36:40 Growing kidney organoids Subsection 8 3 0 11
2018-11-25 10:36:40 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-25 10:36:40 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-25 10:36:40 Introduction Section 0 1 0 1
2018-11-25 10:36:40 Splatter publication Section 0 2 0 2
2018-11-25 10:36:40 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-25 10:36:40 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 10:36:40 Conclusion Chapter 0 1 0 1
2018-11-25 10:36:40 References Chapter 0 1 0 1
2018-11-25 11:28:03 docs/thesis.tex Document 7711 86 0 7797
2018-11-25 11:28:03 Introduction Chapter 7556 56 0 7612
2018-11-25 11:28:03 RNA sequencing Section 1376 10 0 1386
2018-11-25 11:28:03 Library preparation Subsection 417 2 0 419
2018-11-25 11:28:03 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 11:28:03 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 11:28:03 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 11:28:03 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 11:28:03 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 11:28:03 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 11:28:03 Recent advances Subsection 390 2 0 392
2018-11-25 11:28:03 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 11:28:03 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 11:28:03 Normalisation and integration Subsection 509 3 0 512
2018-11-25 11:28:03 Grouping cells Subsection 388 2 0 390
2018-11-25 11:28:03 Ordering cells Subsection 349 2 0 351
2018-11-25 11:28:03 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 11:28:03 Alternative analyses Subsection 115 2 0 117
2018-11-25 11:28:03 Kidney development Section 915 11 0 926
2018-11-25 11:28:03 Structure and function Subsection 547 3 0 550
2018-11-25 11:28:03 Stages of development Subsection 360 3 0 363
2018-11-25 11:28:03 Growing kidney organoids Subsection 8 3 0 11
2018-11-25 11:28:03 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-25 11:28:03 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-25 11:28:03 Introduction Section 0 1 0 1
2018-11-25 11:28:03 Splatter publication Section 0 2 0 2
2018-11-25 11:28:03 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-25 11:28:03 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 11:28:03 Conclusion Chapter 0 1 0 1
2018-11-25 11:28:03 References Chapter 0 1 0 1
2018-11-25 12:23:51 docs/thesis.tex Document 8299 86 0 8385
2018-11-25 12:23:51 Introduction Chapter 8144 56 0 8200
2018-11-25 12:23:51 RNA sequencing Section 1376 10 0 1386
2018-11-25 12:23:51 Library preparation Subsection 417 2 0 419
2018-11-25 12:23:51 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 12:23:51 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 12:23:51 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 12:23:51 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 12:23:51 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 12:23:51 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 12:23:51 Recent advances Subsection 390 2 0 392
2018-11-25 12:23:51 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 12:23:51 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 12:23:51 Normalisation and integration Subsection 509 3 0 512
2018-11-25 12:23:51 Grouping cells Subsection 388 2 0 390
2018-11-25 12:23:51 Ordering cells Subsection 349 2 0 351
2018-11-25 12:23:51 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 12:23:51 Alternative analyses Subsection 115 2 0 117
2018-11-25 12:23:51 Kidney development Section 1503 11 0 1514
2018-11-25 12:23:51 Structure and function Subsection 547 3 0 550
2018-11-25 12:23:51 Stages of development Subsection 360 3 0 363
2018-11-25 12:23:51 Growing kidney organoids Subsection 596 3 0 599
2018-11-25 12:23:51 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-25 12:23:51 Simulating scRNA-seq data Chapter 0 6 0 6
2018-11-25 12:23:51 Introduction Section 0 1 0 1
2018-11-25 12:23:51 Splatter publication Section 0 2 0 2
2018-11-25 12:23:51 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-25 12:23:51 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 12:23:51 Conclusion Chapter 0 1 0 1
2018-11-25 12:23:51 References Chapter 0 1 0 1
2018-11-25 13:57:07 docs/thesis.tex Document 8773 86 0 8859
2018-11-25 13:57:07 Introduction Chapter 8144 56 0 8200
2018-11-25 13:57:07 RNA sequencing Section 1376 10 0 1386
2018-11-25 13:57:07 Library preparation Subsection 417 2 0 419
2018-11-25 13:57:07 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 13:57:07 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 13:57:07 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 13:57:07 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 13:57:07 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 13:57:07 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 13:57:07 Recent advances Subsection 390 2 0 392
2018-11-25 13:57:07 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 13:57:07 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 13:57:07 Normalisation and integration Subsection 509 3 0 512
2018-11-25 13:57:07 Grouping cells Subsection 388 2 0 390
2018-11-25 13:57:07 Ordering cells Subsection 349 2 0 351
2018-11-25 13:57:07 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 13:57:07 Alternative analyses Subsection 115 2 0 117
2018-11-25 13:57:07 Kidney development Section 1503 11 0 1514
2018-11-25 13:57:07 Structure and function Subsection 547 3 0 550
2018-11-25 13:57:07 Stages of development Subsection 360 3 0 363
2018-11-25 13:57:07 Growing kidney organoids Subsection 596 3 0 599
2018-11-25 13:57:07 The scRNA-seq tools landscape Chapter 0 4 0 4
2018-11-25 13:57:07 Simulating scRNA-seq data Chapter 474 6 0 480
2018-11-25 13:57:07 Introduction Section 474 1 0 475
2018-11-25 13:57:07 Splatter publication Section 0 2 0 2
2018-11-25 13:57:07 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-25 13:57:07 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 13:57:07 Conclusion Chapter 0 1 0 1
2018-11-25 13:57:07 References Chapter 0 1 0 1
2018-11-25 14:29:39 docs/thesis.tex Document 9133 87 0 9220
2018-11-25 14:29:39 Introduction Chapter 8144 56 0 8200
2018-11-25 14:29:39 RNA sequencing Section 1376 10 0 1386
2018-11-25 14:29:39 Library preparation Subsection 417 2 0 419
2018-11-25 14:29:39 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 14:29:39 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 14:29:39 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 14:29:39 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 14:29:39 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 14:29:39 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 14:29:39 Recent advances Subsection 390 2 0 392
2018-11-25 14:29:39 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 14:29:39 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 14:29:39 Normalisation and integration Subsection 509 3 0 512
2018-11-25 14:29:39 Grouping cells Subsection 388 2 0 390
2018-11-25 14:29:39 Ordering cells Subsection 349 2 0 351
2018-11-25 14:29:39 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 14:29:39 Alternative analyses Subsection 115 2 0 117
2018-11-25 14:29:39 Kidney development Section 1503 11 0 1514
2018-11-25 14:29:39 Structure and function Subsection 547 3 0 550
2018-11-25 14:29:39 Stages of development Subsection 360 3 0 363
2018-11-25 14:29:39 Growing kidney organoids Subsection 596 3 0 599
2018-11-25 14:29:39 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-11-25 14:29:39 Introduction Section 360 1 0 361
2018-11-25 14:29:39 Simulating scRNA-seq data Chapter 474 6 0 480
2018-11-25 14:29:39 Introduction Section 474 1 0 475
2018-11-25 14:29:39 Splatter publication Section 0 2 0 2
2018-11-25 14:29:39 Visualising clustering across resolutions Chapter 0 4 0 4
2018-11-25 14:29:39 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 14:29:39 Conclusion Chapter 0 1 0 1
2018-11-25 14:29:39 References Chapter 0 1 0 1
2018-11-25 15:07:07 docs/thesis.tex Document 9573 88 0 9661
2018-11-25 15:07:07 Introduction Chapter 8144 56 0 8200
2018-11-25 15:07:07 RNA sequencing Section 1376 10 0 1386
2018-11-25 15:07:07 Library preparation Subsection 417 2 0 419
2018-11-25 15:07:07 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 15:07:07 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 15:07:07 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 15:07:07 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 15:07:07 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 15:07:07 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 15:07:07 Recent advances Subsection 390 2 0 392
2018-11-25 15:07:07 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 15:07:07 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 15:07:07 Normalisation and integration Subsection 509 3 0 512
2018-11-25 15:07:07 Grouping cells Subsection 388 2 0 390
2018-11-25 15:07:07 Ordering cells Subsection 349 2 0 351
2018-11-25 15:07:07 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 15:07:07 Alternative analyses Subsection 115 2 0 117
2018-11-25 15:07:07 Kidney development Section 1503 11 0 1514
2018-11-25 15:07:07 Structure and function Subsection 547 3 0 550
2018-11-25 15:07:07 Stages of development Subsection 360 3 0 363
2018-11-25 15:07:07 Growing kidney organoids Subsection 596 3 0 599
2018-11-25 15:07:07 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-11-25 15:07:07 Introduction Section 360 1 0 361
2018-11-25 15:07:07 Simulating scRNA-seq data Chapter 474 6 0 480
2018-11-25 15:07:07 Introduction Section 474 1 0 475
2018-11-25 15:07:07 Splatter publication Section 0 2 0 2
2018-11-25 15:07:07 Visualising clustering across resolutions Chapter 440 5 0 445
2018-11-25 15:07:07 Introduction Section 440 1 0 441
2018-11-25 15:07:07 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 15:07:07 Conclusion Chapter 0 1 0 1
2018-11-25 15:07:07 References Chapter 0 1 0 1
2018-11-25 16:53:18 docs/thesis.tex Document 10411 88 0 10499
2018-11-25 16:53:18 Introduction Chapter 8144 56 0 8200
2018-11-25 16:53:18 RNA sequencing Section 1376 10 0 1386
2018-11-25 16:53:18 Library preparation Subsection 417 2 0 419
2018-11-25 16:53:18 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 16:53:18 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 16:53:18 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 16:53:18 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 16:53:18 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 16:53:18 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 16:53:18 Recent advances Subsection 390 2 0 392
2018-11-25 16:53:18 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 16:53:18 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 16:53:18 Normalisation and integration Subsection 509 3 0 512
2018-11-25 16:53:18 Grouping cells Subsection 388 2 0 390
2018-11-25 16:53:18 Ordering cells Subsection 349 2 0 351
2018-11-25 16:53:18 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 16:53:18 Alternative analyses Subsection 115 2 0 117
2018-11-25 16:53:18 Kidney development Section 1503 11 0 1514
2018-11-25 16:53:18 Structure and function Subsection 547 3 0 550
2018-11-25 16:53:18 Stages of development Subsection 360 3 0 363
2018-11-25 16:53:18 Growing kidney organoids Subsection 596 3 0 599
2018-11-25 16:53:18 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-11-25 16:53:18 Introduction Section 360 1 0 361
2018-11-25 16:53:18 Simulating scRNA-seq data Chapter 474 6 0 480
2018-11-25 16:53:18 Introduction Section 474 1 0 475
2018-11-25 16:53:18 Splatter publication Section 0 2 0 2
2018-11-25 16:53:18 Visualising clustering across resolutions Chapter 440 5 0 445
2018-11-25 16:53:18 Introduction Section 440 1 0 441
2018-11-25 16:53:18 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 16:53:18 Conclusion Chapter 0 1 0 1
2018-11-25 16:53:18 References Chapter 0 1 0 1
2018-11-25 17:33:15 docs/thesis.tex Document 11056 88 0 11144
2018-11-25 17:33:15 Introduction Chapter 8144 56 0 8200
2018-11-25 17:33:15 RNA sequencing Section 1376 10 0 1386
2018-11-25 17:33:15 Library preparation Subsection 417 2 0 419
2018-11-25 17:33:15 High-throughput sequencing Subsection 246 2 0 248
2018-11-25 17:33:15 Analysis of RNA-seq data Subsection 493 4 0 497
2018-11-25 17:33:15 Single-cell RNA-sequencing Section 258 2 0 260
2018-11-25 17:33:15 Single-cell capture technologies Section 1390 12 0 1402
2018-11-25 17:33:15 Droplet based cell capture Subsection 311 4 0 315
2018-11-25 17:33:15 Unique Molecular Identifiers Subsection 346 3 0 349
2018-11-25 17:33:15 Recent advances Subsection 390 2 0 392
2018-11-25 17:33:15 Analysing scRNA-seq data Section 3144 20 0 3164
2018-11-25 17:33:15 Pre-processing and quality control Subsection 544 4 0 548
2018-11-25 17:33:15 Normalisation and integration Subsection 509 3 0 512
2018-11-25 17:33:15 Grouping cells Subsection 388 2 0 390
2018-11-25 17:33:15 Ordering cells Subsection 349 2 0 351
2018-11-25 17:33:15 Gene detection and interpretation Subsection 496 4 0 500
2018-11-25 17:33:15 Alternative analyses Subsection 115 2 0 117
2018-11-25 17:33:15 Kidney development Section 1503 11 0 1514
2018-11-25 17:33:15 Structure and function Subsection 547 3 0 550
2018-11-25 17:33:15 Stages of development Subsection 360 3 0 363
2018-11-25 17:33:15 Growing kidney organoids Subsection 596 3 0 599
2018-11-25 17:33:15 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-11-25 17:33:15 Introduction Section 360 1 0 361
2018-11-25 17:33:15 Simulating scRNA-seq data Chapter 474 6 0 480
2018-11-25 17:33:15 Introduction Section 474 1 0 475
2018-11-25 17:33:15 Splatter publication Section 0 2 0 2
2018-11-25 17:33:15 Visualising clustering across resolutions Chapter 440 5 0 445
2018-11-25 17:33:15 Introduction Section 440 1 0 441
2018-11-25 17:33:15 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-11-25 17:33:15 Conclusion Chapter 645 1 0 646
2018-11-25 17:33:15 References Chapter 0 1 0 1
2018-12-11 12:41:43 docs/thesis.tex Document 11173 88 0 11261
2018-12-11 12:41:43 Introduction Chapter 8144 56 0 8200
2018-12-11 12:41:43 RNA sequencing Section 1376 10 0 1386
2018-12-11 12:41:43 Library preparation Subsection 417 2 0 419
2018-12-11 12:41:43 High-throughput sequencing Subsection 246 2 0 248
2018-12-11 12:41:43 Analysis of RNA-seq data Subsection 493 4 0 497
2018-12-11 12:41:43 Single-cell RNA-sequencing Section 258 2 0 260
2018-12-11 12:41:43 Single-cell capture technologies Section 1390 12 0 1402
2018-12-11 12:41:43 Droplet based cell capture Subsection 311 4 0 315
2018-12-11 12:41:43 Unique Molecular Identifiers Subsection 346 3 0 349
2018-12-11 12:41:43 Recent advances Subsection 390 2 0 392
2018-12-11 12:41:43 Analysing scRNA-seq data Section 3144 20 0 3164
2018-12-11 12:41:43 Pre-processing and quality control Subsection 544 4 0 548
2018-12-11 12:41:43 Normalisation and integration Subsection 509 3 0 512
2018-12-11 12:41:43 Grouping cells Subsection 388 2 0 390
2018-12-11 12:41:43 Ordering cells Subsection 349 2 0 351
2018-12-11 12:41:43 Gene detection and interpretation Subsection 496 4 0 500
2018-12-11 12:41:43 Alternative analyses Subsection 115 2 0 117
2018-12-11 12:41:43 Kidney development Section 1503 11 0 1514
2018-12-11 12:41:43 Structure and function Subsection 547 3 0 550
2018-12-11 12:41:43 Stages of development Subsection 360 3 0 363
2018-12-11 12:41:43 Growing kidney organoids Subsection 596 3 0 599
2018-12-11 12:41:43 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-11 12:41:43 Introduction Section 360 1 0 361
2018-12-11 12:41:43 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-11 12:41:43 Introduction Section 474 1 0 475
2018-12-11 12:41:43 Splatter publication Section 0 2 0 2
2018-12-11 12:41:43 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-11 12:41:43 Introduction Section 440 1 0 441
2018-12-11 12:41:43 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-11 12:41:43 Conclusion Chapter 645 1 0 646
2018-12-11 12:41:43 References Chapter 0 1 0 1
2018-12-11 16:41:45 docs/thesis.tex Document 11252 88 0 11340
2018-12-11 16:41:45 Introduction Chapter 8223 56 0 8279
2018-12-11 16:41:45 RNA sequencing Section 1376 10 0 1386
2018-12-11 16:41:45 Library preparation Subsection 417 2 0 419
2018-12-11 16:41:45 High-throughput sequencing Subsection 246 2 0 248
2018-12-11 16:41:45 Analysis of RNA-seq data Subsection 493 4 0 497
2018-12-11 16:41:45 Single-cell RNA-sequencing Section 258 2 0 260
2018-12-11 16:41:45 Single-cell capture technologies Section 1390 12 0 1402
2018-12-11 16:41:45 Droplet based cell capture Subsection 311 4 0 315
2018-12-11 16:41:45 Unique Molecular Identifiers Subsection 346 3 0 349
2018-12-11 16:41:45 Recent advances Subsection 390 2 0 392
2018-12-11 16:41:45 Analysing scRNA-seq data Section 3144 20 0 3164
2018-12-11 16:41:45 Pre-processing and quality control Subsection 544 4 0 548
2018-12-11 16:41:45 Normalisation and integration Subsection 509 3 0 512
2018-12-11 16:41:45 Grouping cells Subsection 388 2 0 390
2018-12-11 16:41:45 Ordering cells Subsection 349 2 0 351
2018-12-11 16:41:45 Gene detection and interpretation Subsection 496 4 0 500
2018-12-11 16:41:45 Alternative analyses Subsection 115 2 0 117
2018-12-11 16:41:45 Kidney development Section 1503 11 0 1514
2018-12-11 16:41:45 Structure and function Subsection 547 3 0 550
2018-12-11 16:41:45 Stages of development Subsection 360 3 0 363
2018-12-11 16:41:45 Growing kidney organoids Subsection 596 3 0 599
2018-12-11 16:41:45 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-11 16:41:45 Introduction Section 360 1 0 361
2018-12-11 16:41:45 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-11 16:41:45 Introduction Section 474 1 0 475
2018-12-11 16:41:45 Splatter publication Section 0 2 0 2
2018-12-11 16:41:45 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-11 16:41:45 Introduction Section 440 1 0 441
2018-12-11 16:41:45 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-11 16:41:45 Conclusion Chapter 645 1 0 646
2018-12-11 16:41:45 References Chapter 0 1 0 1
2018-12-12 15:44:56 docs/thesis.tex Document 11440 88 0 11528
2018-12-12 15:44:56 Introduction Chapter 8411 56 0 8467
2018-12-12 15:44:56 RNA sequencing Section 1564 10 0 1574
2018-12-12 15:44:56 Library preparation Subsection 437 2 0 439
2018-12-12 15:44:56 High-throughput sequencing Subsection 245 2 0 247
2018-12-12 15:44:56 Analysis of RNA-seq data Subsection 672 4 0 676
2018-12-12 15:44:56 Single-cell RNA-sequencing Section 258 2 0 260
2018-12-12 15:44:56 Single-cell capture technologies Section 1390 12 0 1402
2018-12-12 15:44:56 Droplet based cell capture Subsection 311 4 0 315
2018-12-12 15:44:56 Unique Molecular Identifiers Subsection 346 3 0 349
2018-12-12 15:44:56 Recent advances Subsection 390 2 0 392
2018-12-12 15:44:56 Analysing scRNA-seq data Section 3144 20 0 3164
2018-12-12 15:44:56 Pre-processing and quality control Subsection 544 4 0 548
2018-12-12 15:44:56 Normalisation and integration Subsection 509 3 0 512
2018-12-12 15:44:56 Grouping cells Subsection 388 2 0 390
2018-12-12 15:44:56 Ordering cells Subsection 349 2 0 351
2018-12-12 15:44:56 Gene detection and interpretation Subsection 496 4 0 500
2018-12-12 15:44:56 Alternative analyses Subsection 115 2 0 117
2018-12-12 15:44:56 Kidney development Section 1503 11 0 1514
2018-12-12 15:44:56 Structure and function Subsection 547 3 0 550
2018-12-12 15:44:56 Stages of development Subsection 360 3 0 363
2018-12-12 15:44:56 Growing kidney organoids Subsection 596 3 0 599
2018-12-12 15:44:56 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-12 15:44:56 Introduction Section 360 1 0 361
2018-12-12 15:44:56 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-12 15:44:56 Introduction Section 474 1 0 475
2018-12-12 15:44:56 Splatter publication Section 0 2 0 2
2018-12-12 15:44:56 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-12 15:44:56 Introduction Section 440 1 0 441
2018-12-12 15:44:56 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-12 15:44:56 Conclusion Chapter 645 1 0 646
2018-12-12 15:44:56 References Chapter 0 1 0 1
2018-12-13 16:59:46 docs/thesis.tex Document 11610 92 0 11702
2018-12-13 16:59:46 Introduction Chapter 8581 60 0 8641
2018-12-13 16:59:46 RNA sequencing Section 1564 10 0 1574
2018-12-13 16:59:46 Library preparation Subsection 437 2 0 439
2018-12-13 16:59:46 High-throughput sequencing Subsection 245 2 0 247
2018-12-13 16:59:46 Analysis of RNA-seq data Subsection 672 4 0 676
2018-12-13 16:59:46 Single-cell RNA-sequencing Section 1721 18 0 1739
2018-12-13 16:59:46 Early single-cell capture technologies Subsection 348 4 0 352
2018-12-13 16:59:46 Droplet based cell capture Subsection 320 4 0 324
2018-12-13 16:59:46 Unique Molecular Identifiers Subsection 389 3 0 392
2018-12-13 16:59:46 Recent advances in scRNA-seq protocols Subsection 516 5 0 521
2018-12-13 16:59:46 Analysing scRNA-seq data Section 3134 20 0 3154
2018-12-13 16:59:46 Pre-processing and quality control Subsection 544 4 0 548
2018-12-13 16:59:46 Normalisation and integration Subsection 509 3 0 512
2018-12-13 16:59:46 Grouping cells Subsection 388 2 0 390
2018-12-13 16:59:46 Ordering cells Subsection 349 2 0 351
2018-12-13 16:59:46 Gene detection and interpretation Subsection 496 4 0 500
2018-12-13 16:59:46 Alternative analyses Subsection 115 2 0 117
2018-12-13 16:59:46 Kidney development Section 1610 11 0 1621
2018-12-13 16:59:46 Structure and function Subsection 547 3 0 550
2018-12-13 16:59:46 Stages of development Subsection 360 3 0 363
2018-12-13 16:59:46 Growing kidney organoids Subsection 596 3 0 599
2018-12-13 16:59:46 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-13 16:59:46 Introduction Section 360 1 0 361
2018-12-13 16:59:46 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-13 16:59:46 Introduction Section 474 1 0 475
2018-12-13 16:59:46 Splatter publication Section 0 2 0 2
2018-12-13 16:59:46 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-13 16:59:46 Introduction Section 440 1 0 441
2018-12-13 16:59:46 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-13 16:59:46 Conclusion Chapter 645 1 0 646
2018-12-13 16:59:46 References Chapter 0 1 0 1
2018-12-14 17:15:37 docs/thesis.tex Document 11881 92 0 11973
2018-12-14 17:15:37 Introduction Chapter 8852 60 0 8912
2018-12-14 17:15:37 RNA sequencing Section 1564 10 0 1574
2018-12-14 17:15:37 Library preparation Subsection 437 2 0 439
2018-12-14 17:15:37 High-throughput sequencing Subsection 245 2 0 247
2018-12-14 17:15:37 Analysis of RNA-seq data Subsection 672 4 0 676
2018-12-14 17:15:37 Single-cell RNA-sequencing Section 1721 18 0 1739
2018-12-14 17:15:37 Early single-cell capture technologies Subsection 348 4 0 352
2018-12-14 17:15:37 Droplet based cell capture Subsection 320 4 0 324
2018-12-14 17:15:37 Unique Molecular Identifiers Subsection 389 3 0 392
2018-12-14 17:15:37 Recent advances in scRNA-seq protocols Subsection 516 5 0 521
2018-12-14 17:15:37 Analysing scRNA-seq data Section 3405 20 0 3425
2018-12-14 17:15:37 Pre-processing and quality control Subsection 565 4 0 569
2018-12-14 17:15:37 Normalisation and integration Subsection 579 3 0 582
2018-12-14 17:15:37 Grouping cells Subsection 413 2 0 415
2018-12-14 17:15:37 Ordering cells Subsection 392 2 0 394
2018-12-14 17:15:37 Gene detection and interpretation Subsection 606 4 0 610
2018-12-14 17:15:37 Alternative analyses Subsection 117 2 0 119
2018-12-14 17:15:37 Kidney development Section 1610 11 0 1621
2018-12-14 17:15:37 Structure and function Subsection 547 3 0 550
2018-12-14 17:15:37 Stages of development Subsection 360 3 0 363
2018-12-14 17:15:37 Growing kidney organoids Subsection 596 3 0 599
2018-12-14 17:15:37 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-14 17:15:37 Introduction Section 360 1 0 361
2018-12-14 17:15:37 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-14 17:15:37 Introduction Section 474 1 0 475
2018-12-14 17:15:37 Splatter publication Section 0 2 0 2
2018-12-14 17:15:37 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-14 17:15:37 Introduction Section 440 1 0 441
2018-12-14 17:15:37 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-14 17:15:37 Conclusion Chapter 645 1 0 646
2018-12-14 17:15:37 References Chapter 0 1 0 1
2018-12-15 20:39:21 docs/thesis.tex Document 11906 92 0 11998
2018-12-15 20:39:21 Introduction Chapter 8877 60 0 8937
2018-12-15 20:39:21 RNA sequencing Section 1564 10 0 1574
2018-12-15 20:39:21 Library preparation Subsection 437 2 0 439
2018-12-15 20:39:21 High-throughput sequencing Subsection 245 2 0 247
2018-12-15 20:39:21 Analysis of RNA-seq data Subsection 672 4 0 676
2018-12-15 20:39:21 Single-cell RNA-sequencing Section 1721 18 0 1739
2018-12-15 20:39:21 Early single-cell capture technologies Subsection 348 4 0 352
2018-12-15 20:39:21 Droplet based cell capture Subsection 320 4 0 324
2018-12-15 20:39:21 Unique Molecular Identifiers Subsection 389 3 0 392
2018-12-15 20:39:21 Recent advances in scRNA-seq protocols Subsection 516 5 0 521
2018-12-15 20:39:21 Analysing scRNA-seq data Section 3405 20 0 3425
2018-12-15 20:39:21 Pre-processing and quality control Subsection 565 4 0 569
2018-12-15 20:39:21 Normalisation and integration Subsection 579 3 0 582
2018-12-15 20:39:21 Grouping cells Subsection 413 2 0 415
2018-12-15 20:39:21 Ordering cells Subsection 392 2 0 394
2018-12-15 20:39:21 Gene detection and interpretation Subsection 606 4 0 610
2018-12-15 20:39:21 Alternative analyses Subsection 117 2 0 119
2018-12-15 20:39:21 Kidney development Section 1635 11 0 1646
2018-12-15 20:39:21 Structure and function Subsection 546 3 0 549
2018-12-15 20:39:21 Stages of development Subsection 358 3 0 361
2018-12-15 20:39:21 Growing kidney organoids Subsection 606 3 0 609
2018-12-15 20:39:21 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-15 20:39:21 Introduction Section 360 1 0 361
2018-12-15 20:39:21 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-15 20:39:21 Introduction Section 474 1 0 475
2018-12-15 20:39:21 Splatter publication Section 0 2 0 2
2018-12-15 20:39:21 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-15 20:39:21 Introduction Section 440 1 0 441
2018-12-15 20:39:21 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-15 20:39:21 Conclusion Chapter 645 1 0 646
2018-12-15 20:39:21 References Chapter 0 1 0 1
2018-12-16 21:47:07 docs/thesis.tex Document 12033 92 314 12439
2018-12-16 21:47:07 Introduction Chapter 9004 60 314 9378
2018-12-16 21:47:07 RNA sequencing Section 1566 10 142 1718
2018-12-16 21:47:07 Library preparation Subsection 438 2 66 506
2018-12-16 21:47:07 High-throughput sequencing Subsection 246 2 76 324
2018-12-16 21:47:07 Analysis of RNA-seq data Subsection 672 4 0 676
2018-12-16 21:47:07 Single-cell RNA-sequencing Section 1845 18 111 1974
2018-12-16 21:47:07 Early single-cell capture technologies Subsection 360 4 52 416
2018-12-16 21:47:07 Droplet based cell capture Subsection 320 4 0 324
2018-12-16 21:47:07 Unique Molecular Identifiers Subsection 390 3 59 452
2018-12-16 21:47:07 Recent advances in scRNA-seq protocols Subsection 627 5 0 632
2018-12-16 21:47:07 Analysing scRNA-seq data Section 3406 20 61 3487
2018-12-16 21:47:07 Pre-processing and quality control Subsection 565 4 0 569
2018-12-16 21:47:07 Normalisation and integration Subsection 579 3 0 582
2018-12-16 21:47:07 Grouping cells Subsection 413 2 0 415
2018-12-16 21:47:07 Ordering cells Subsection 392 2 0 394
2018-12-16 21:47:07 Gene detection and interpretation Subsection 606 4 0 610
2018-12-16 21:47:07 Alternative analyses Subsection 117 2 0 119
2018-12-16 21:47:07 Kidney development Section 1635 11 0 1646
2018-12-16 21:47:07 Structure and function Subsection 546 3 0 549
2018-12-16 21:47:07 Stages of development Subsection 358 3 0 361
2018-12-16 21:47:07 Growing kidney organoids Subsection 606 3 0 609
2018-12-16 21:47:07 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-16 21:47:07 Introduction Section 360 1 0 361
2018-12-16 21:47:07 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-16 21:47:07 Introduction Section 474 1 0 475
2018-12-16 21:47:07 Splatter publication Section 0 2 0 2
2018-12-16 21:47:07 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-16 21:47:07 Introduction Section 440 1 0 441
2018-12-16 21:47:07 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-16 21:47:07 Conclusion Chapter 645 1 0 646
2018-12-16 21:47:07 References Chapter 0 1 0 1
2018-12-17 16:52:01 docs/thesis.tex Document 12053 92 847 12992
2018-12-17 16:52:01 Introduction Chapter 9024 60 847 9931
2018-12-17 16:52:01 RNA sequencing Section 1567 10 220 1797
2018-12-17 16:52:01 Library preparation Subsection 438 2 66 506
2018-12-17 16:52:01 High-throughput sequencing Subsection 246 2 76 324
2018-12-17 16:52:01 Analysis of RNA-seq data Subsection 673 4 78 755
2018-12-17 16:52:01 Single-cell RNA-sequencing Section 1850 18 288 2156
2018-12-17 16:52:01 Early single-cell capture technologies Subsection 360 4 52 416
2018-12-17 16:52:01 Droplet based cell capture Subsection 321 4 84 409
2018-12-17 16:52:01 Unique Molecular Identifiers Subsection 390 3 59 452
2018-12-17 16:52:01 Recent advances in scRNA-seq protocols Subsection 631 5 93 729
2018-12-17 16:52:01 Analysing scRNA-seq data Section 3413 20 114 3547
2018-12-17 16:52:01 Pre-processing and quality control Subsection 565 4 0 569
2018-12-17 16:52:01 Normalisation and integration Subsection 579 3 0 582
2018-12-17 16:52:01 Grouping cells Subsection 413 2 0 415
2018-12-17 16:52:01 Ordering cells Subsection 399 2 53 454
2018-12-17 16:52:01 Gene detection and interpretation Subsection 606 4 0 610
2018-12-17 16:52:01 Alternative analyses Subsection 117 2 0 119
2018-12-17 16:52:01 Kidney development Section 1642 11 167 1820
2018-12-17 16:52:01 Structure and function Subsection 552 3 81 636
2018-12-17 16:52:01 Stages of development Subsection 358 3 0 361
2018-12-17 16:52:01 Growing kidney organoids Subsection 607 3 86 696
2018-12-17 16:52:01 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-17 16:52:01 Introduction Section 360 1 0 361
2018-12-17 16:52:01 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-17 16:52:01 Introduction Section 474 1 0 475
2018-12-17 16:52:01 Splatter publication Section 0 2 0 2
2018-12-17 16:52:01 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-17 16:52:01 Introduction Section 440 1 0 441
2018-12-17 16:52:01 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-17 16:52:01 Conclusion Chapter 645 1 0 646
2018-12-17 16:52:01 References Chapter 0 1 0 1
2018-12-19 16:22:32 docs/thesis.tex Document 12195 100 5941 18236
2018-12-19 16:22:32 Introduction Chapter 9166 68 852 10086
2018-12-19 16:22:32 RNA sequencing Section 1572 18 222 1812
2018-12-19 16:22:32 Library preparation Subsection 437 2 67 506
2018-12-19 16:22:32 High-throughput sequencing Subsection 246 2 77 325
2018-12-19 16:22:32 Analysis of RNA-seq data Many types of analyses can be performed using Subsection 679 12 78 769
2018-12-19 16:22:32 Single-cell RNA-sequencing Section 1890 18 289 2197
2018-12-19 16:22:32 Early single-cell capture technologies Subsection 368 4 52 424
2018-12-19 16:22:32 Droplet based cell capture Subsection 328 4 84 416
2018-12-19 16:22:32 Unique Molecular Identifiers Subsection 392 3 59 454
2018-12-19 16:22:32 Recent advances in scRNA-seq protocols Subsection 654 5 94 753
2018-12-19 16:22:32 Analysing scRNA-seq data Section 3502 20 115 3637
2018-12-19 16:22:32 Pre-processing and quality control Subsection 554 4 0 558
2018-12-19 16:22:32 Normalisation and integration Subsection 593 3 0 596
2018-12-19 16:22:32 Grouping cells Subsection 434 2 0 436
2018-12-19 16:22:32 Ordering cells Subsection 414 2 54 470
2018-12-19 16:22:32 Gene detection and interpretation Subsection 641 4 0 645
2018-12-19 16:22:32 Alternative analyses Subsection 130 2 0 132
2018-12-19 16:22:32 Kidney development Section 1648 11 168 1827
2018-12-19 16:22:32 Structure and function Subsection 552 3 81 636
2018-12-19 16:22:32 Stages of development Subsection 359 3 0 362
2018-12-19 16:22:32 Growing kidney organoids Subsection 612 3 87 702
2018-12-19 16:22:32 The scRNA-seq tools landscape Chapter 360 5 0 365
2018-12-19 16:22:32 Introduction Section 360 1 0 361
2018-12-19 16:22:32 Simulating scRNA-seq data Chapter 474 6 0 480
2018-12-19 16:22:32 Introduction Section 474 1 0 475
2018-12-19 16:22:32 Splatter publication Section 0 2 0 2
2018-12-19 16:22:32 Visualising clustering across resolutions Chapter 440 5 0 445
2018-12-19 16:22:32 Introduction Section 440 1 0 441
2018-12-19 16:22:32 Analysis of kidney organoid scRNA-seq data Chapter 0 6 0 6
2018-12-19 16:22:32 Conclusion Chapter 645 1 0 646
2018-12-19 16:22:32 References Chapter 0 1 5089 5090
2018-12-19 18:51:12 docs/thesis.tex Document 12672 108 6122 18902
2018-12-19 18:51:12 Introduction Chapter 9643 76 852 10571
2018-12-19 18:51:12 RNA sequencing Section 1572 18 222 1812