genocut

This package generates random fragments of k length from a larger sequences in FASTA format without overlap

Required library: gzstream

• In Debian/Ubuntu: apt install libgzstream-dev

In R instalation:

devtools::install_github ("https://github.com/otaviojbbrustolini/genocut.git")

Required R/Bioconductor packages:

• Biostrings (Bioconductor)
• stringr

Work in progress

If you have any queries or find a bug, please submit an issue on GitHub or email atrv@lncc.br.

Credits

This pipeline was developed by Andrade, AAS (aandradebio@gmail.com) and Brustolini, Otávio at the National Laboratory for Scientific Computing - Bioinformatic Laboratory (LABINFO), with contributions from Grivet, Marco., Schrago, Carlos G, and Vasconcelos, ATR.

Andrade AAS, Brustolini O, Grivet M, Schrago C, and Vasconcelos, ATR. Predicting novel mosquito-associated viruses from metatranscriptomic dark matter. (in press)