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'float' object has no attribute 'replace' #58

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im281 opened this issue Jan 8, 2021 · 0 comments
Open

'float' object has no attribute 'replace' #58

im281 opened this issue Jan 8, 2021 · 0 comments

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@im281
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im281 commented Jan 8, 2021

Prosit csv input example works:
curl -F "peptides=@examples/peptidelist.csv" http://127.0.0.1:5000/predict/generic

Identical csv input format but server returns this:

Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/flask/app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "/usr/local/lib/python3.5/dist-packages/flask/app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/usr/local/lib/python3.5/dist-packages/flask/app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/usr/local/lib/python3.5/dist-packages/flask/compat.py", line 39, in reraise
raise value
File "/usr/local/lib/python3.5/dist-packages/flask/app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "/usr/local/lib/python3.5/dist-packages/flask/app.py", line 1936, in dispatch_request
return self.view_functionsrule.endpoint
File "/root/prosit/server.py", line 36, in return_generic
result = predict(flask.request.files["peptides"])
File "/root/prosit/server.py", line 28, in predict
data = tensorize.csv(df)
File "/root/prosit/tensorize.py", line 94, in csv
"sequence_integer": get_sequence_integer(df.modified_sequence),
File "/root/prosit/tensorize.py", line 51, in get_sequence_integer
for j, s in enumerate(utils.peptide_parser(sequence)):
File "/root/prosit/utils.py", line 26, in peptide_parser
p = p.replace("
", "")
AttributeError: 'float' object has no attribute 'replace'
172.17.0.1 - - [08/Jan/2021 19:23:11] "POST /predict/generic HTTP/1.1" 500 -

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