This is the code repository for our am205 project on "Predict Cancer Immunotherapy Resistance from Network Topology". The repository is divided into a few sections.
- code - code and model in the study
- network_matrices.py: Generates the various influence networks as describe in the paper
- validation.py: Combines influence newtorks with experimental data to validate how well the model is performing.
- Code for generating the initial jacobian for the biomodel can be found here https://github.com/msantolini/dynamo
- data - data and results used in the study
- plots - code to generate plots in the study
- report - LaTeX source and pdf of the report