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Multi-context seeds plus fixes and optimized parameters CI #1722: Pull request #426 synchronize by marcelm
May 22, 2024 11:10 4s mcs-optimized-parameters
mcs-optimized-parameters
May 22, 2024 11:10 4s
Merge branch 'main' into mcs-optimized-parameters CI #1721: Commit 1412e74 pushed by marcelm
May 22, 2024 11:10 1m 33s mcs-optimized-parameters
mcs-optimized-parameters
May 22, 2024 11:10 1m 33s
Updated parameters according to optimization in issue #423 CI #1720: Commit bb2c603 pushed by ksahlin
May 20, 2024 13:44 1m 39s mcs-optimized-parameters
mcs-optimized-parameters
May 20, 2024 13:44 1m 39s
Merge pull request #425 from ksahlin/optional CI #1719: Commit f59bcb4 pushed by marcelm
May 14, 2024 21:56 1m 54s main
main
May 14, 2024 21:56 1m 54s
Fix: Do not report failed alignments CI #1718: Pull request #425 synchronize by marcelm
May 14, 2024 21:52 3s optional
optional
May 14, 2024 21:52 3s
Clarify what -U does CI #1717: Commit a8356a2 pushed by marcelm
May 14, 2024 21:52 2m 17s optional
optional
May 14, 2024 21:52 2m 17s
Fix: Do not report failed alignments CI #1716: Pull request #425 synchronize by marcelm
May 14, 2024 21:50 3s optional
optional
May 14, 2024 21:50 3s
Fix: Do not report failed alignments CI #1715: Commit 6526882 pushed by marcelm
May 14, 2024 21:50 1m 32s optional
optional
May 14, 2024 21:50 1m 32s
Fix: Do not report failed alignments CI #1714: Pull request #425 opened by marcelm
May 14, 2024 13:42 3s optional
optional
May 14, 2024 13:42 3s
Fix: Do not report failed alignments CI #1713: Commit 5ad6496 pushed by marcelm
May 14, 2024 13:34 1m 31s optional
optional
May 14, 2024 13:34 1m 31s
Merge pull request #422 from ksahlin/multiblock CI #1712: Commit f388c1b pushed by marcelm
May 2, 2024 07:01 1m 47s main
main
May 2, 2024 07:01 1m 47s
Format the codebase with clang-format CI #1711: Pull request #266 synchronize by marcelm
April 30, 2024 15:14 4s clang-format
clang-format
April 30, 2024 15:14 4s
Tune formatting settings a bit more CI #1710: Commit d601beb pushed by marcelm
April 30, 2024 15:14 1m 42s clang-format
clang-format
April 30, 2024 15:14 1m 42s
Test multi-block gzip files as input CI #1709: Pull request #422 opened by marcelm
April 30, 2024 12:22 3s multiblock
multiblock
April 30, 2024 12:22 3s
Test multi-block gzip files as input CI #1708: Commit 2dcf215 pushed by marcelm
April 30, 2024 12:21 1m 53s multiblock
multiblock
April 30, 2024 12:21 1m 53s
Fix so that partial rescu hits are added properly CI #1707: Commit 7fe07b4 pushed by ksahlin
April 22, 2024 19:48 1m 38s mcs-optimized-parameters
mcs-optimized-parameters
April 22, 2024 19:48 1m 38s
preventing look up and, thus, adding the same partial hits twice CI #1706: Commit cd10bd7 pushed by ksahlin
April 22, 2024 09:01 1m 41s mcs-optimized-parameters
mcs-optimized-parameters
April 22, 2024 09:01 1m 41s
previous commit took care of some redundant partial hits but because … CI #1705: Commit abdbebb pushed by ksahlin
April 21, 2024 19:24 1m 28s mcs-optimized-parameters
mcs-optimized-parameters
April 21, 2024 19:24 1m 28s
fixes a bug introduced by partial hits: several full seeds can have t… CI #1704: Commit f5a127a pushed by ksahlin
April 21, 2024 18:11 1m 26s mcs-optimized-parameters
mcs-optimized-parameters
April 21, 2024 18:11 1m 26s
reverting to only change shortest read lengths before starting benchm… CI #1703: Commit d9d5aaf pushed by ksahlin
April 20, 2024 18:14 2m 7s mcs-optimized-parameters
mcs-optimized-parameters
April 20, 2024 18:14 2m 7s
typo CI #1702: Commit 36df64c pushed by ksahlin
April 20, 2024 17:41 1m 34s mcs-optimized-parameters
mcs-optimized-parameters
April 20, 2024 17:41 1m 34s
implemented also using partial hits for rescue CI #1701: Commit 7e2a8bc pushed by ksahlin
April 20, 2024 17:40 1m 34s mcs-optimized-parameters
mcs-optimized-parameters
April 20, 2024 17:40 1m 34s
using the same filter cutoff as for full matches as baseline - we can… CI #1700: Commit 650b0bb pushed by ksahlin
April 20, 2024 17:37 1m 56s mcs-optimized-parameters
mcs-optimized-parameters
April 20, 2024 17:37 1m 56s
Add multi-context seeds CI #1699: Pull request #388 synchronize by Itolstoganov
April 19, 2024 15:51 1m 38s Itolstoganov:multi-context-seeds
Itolstoganov:multi-context-seeds
April 19, 2024 15:51 1m 38s
Decompress with ISA-L CI #1698: Pull request #418 opened by marcelm
April 19, 2024 13:29 3s add-isal
add-isal
April 19, 2024 13:29 3s
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