circosPlot

Circos plot of gene interactions using the effect size and individual genotypes within each allele.

This plot was generated using pycircos found here: https://github.com/ponnhide/pyCircos.

Outer ring

Alleles with width set as the summed effect sizes from every SNP in allele.

Middle ring

Heatmap of the genotype effect sizes within each allele (AA, BB, CC, AB,... etc)

Inner circle

Weighted effect sizes (epistatic interactions) between the alleles and subsequently the genotypes within those alleles

Test Plot

I'd like to figure out how to rotate the gene labels to 90 degrees from node and add a figure legend for the haplotype heatmap