update CI workflows

kadyb · Nov 6, 2024 · 06cba3b · 06cba3b
1 parent 50bb8a7
commit 06cba3b
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diff --git a/.github/workflows/lintr.yml b/.github/workflows/lintr.yml
@@ -1,45 +1,34 @@
-# source: https://github.com/r-lib/actions/blob/master/examples/lint.yaml
-
-name: lintr
-
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [ master ]
+    branches: [main, master]
   pull_request:
-    branches: [ master ]
+    branches: [main, master]
+
+name: lintr
+
+permissions: read-all
 
 jobs:
-  lintr:
-    runs-on: macOS-latest
+  lint:
+    runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
     steps:
-    - uses: actions/checkout@v4
-    - uses: r-lib/actions/setup-r@v2
-
-
-    - name: Query dependencies
-      run: |
-        install.packages('remotes')
-        saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-        writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-      shell: Rscript {0}
-
-    - name: Cache R packages
-      uses: actions/cache@v4
-      with:
-        path: ${{ env.R_LIBS_USER }}
-        key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-        restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-
-    - name: Install dependencies
-      run: |
-        options("pkgType" = "binary")
-        remotes::install_deps(dependencies = TRUE)
-        remotes::install_cran("lintr")
-      shell: Rscript {0}
-
-    - name: Lint
-      run: lintr::lint_package()
-      shell: Rscript {0}
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::lintr, local::.
+          needs: lint
+
+      - name: Lint
+        run: lintr::lint_package()
+        shell: Rscript {0}
+        env:
+          LINTR_ERROR_ON_LINT: true
diff --git a/.github/workflows/pkgdown.yml b/.github/workflows/pkgdown.yml
@@ -1,48 +1,50 @@
-# source: https://github.com/r-lib/actions/blob/master/examples/pkgdown.yaml
-
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: master
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
 
 name: pkgdown
 
+permissions: read-all
+
 jobs:
   pkgdown:
-    runs-on: macOS-latest
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
       - uses: actions/checkout@v4
-      - uses: r-lib/actions/setup-r@v2
-      - uses: r-lib/actions/setup-pandoc@v2
 
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
 
-      - name: Cache R packages
-        uses: actions/cache@v4
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-
-      - name: Install dependencies
-        run: |
-          options("pkgType" = "binary")
-          remotes::install_deps(dependencies = TRUE)
-          install.packages("pkgdown")
-        shell: Rscript {0}
+          extra-packages: any::pkgdown, local::.
+          needs: website
 
-      - name: Install package
-        run: R CMD INSTALL .
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
 
-      - name: Deploy package
-        run: |
-          git config --local user.email "actions@github.com"
-          git config --local user.name "GitHub Actions"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, examples = FALSE)'
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml
@@ -1,52 +1,68 @@
-# source: https://github.com/r-lib/actions/blob/master/examples/test-coverage.yaml
-
 # test coverage is skipped for these functions:
 # geonames_download, geodb_download, borders_download (too large file size)
 # DEM_request, ortho_request (requests from GitHub are blocked)
 
-name: test-coverage
-
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [ master ]
+    branches: [main, master]
   pull_request:
-    branches: [ master ]
+    branches: [main, master]
+
+name: test-coverage
+
+permissions: read-all
 
 jobs:
   test-coverage:
-    runs-on: macOS-latest
+    runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
     steps:
       - uses: actions/checkout@v4
+
       - uses: r-lib/actions/setup-r@v2
-      - uses: r-lib/actions/setup-pandoc@v2
+        with:
+          use-public-rspm: true
 
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr, any::xml2
+          needs: coverage
 
-      - name: Query dependencies
+      - name: Test coverage
         run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+          skip_fun = c("geonames_download", "geodb_download", "borders_download",
+                       "DEM_request", "ortho_request", "orto_request")
+          cov <- covr::package_coverage(
+            function_exclusions = skip_fun,
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - name: Cache R packages
-        uses: actions/cache@v4
+      - uses: codecov/codecov-action@v4
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
 
-      - name: Install dependencies
+      - name: Show testthat output
+        if: always()
         run: |
-          options("pkgType" = "binary")
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("covr")
-        shell: Rscript {0}
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
 
-      - name: Test coverage
-        run: |
-          skip_fun = c("geonames_download", "geodb_download", "borders_download",
-                       "DEM_request", "ortho_request", "orto_request")
-          covr::codecov(function_exclusions = skip_fun)
-        shell: Rscript {0}
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package