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Bump pyvista and dolfinx to v0.7.2 #159

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Dec 6, 2023
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@jorgensd jorgensd commented Dec 6, 2023

Re-instate interactive plots using trame html backend.
Use pyproject.toml for project specification
Bump some github actions
Bump DOLFINx to 0.7.2

@jorgensd jorgensd merged commit f7c20ee into main Dec 6, 2023
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jorgensd added a commit that referenced this pull request Dec 7, 2023
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame
jorgensd added a commit that referenced this pull request May 5, 2024
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
@jorgensd jorgensd deleted the dokken/bump-pyvista-and-dolfinx branch May 29, 2024 19:32
jorgensd added a commit that referenced this pull request Dec 16, 2024
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Update based on FEniCS/dolfinx#3547

* Fix merge conflict

* Fix other merge conflict

* Minor fix

* Minor updates

* Remove header and ruff format

* Update note

* Apply suggestions from code review

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
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