summix_py

The Python implementation of The Hendricks Team's summix method, which efficiently solves ancestral deconvolution problems, given a (large) genetic database.

Please see The Hendricks Team's paper on bioRxiv

Installation instructions:

• If you do not a computational environment set up to run Python and Jupyter Notebooks, download Anaconda
• Clone this repo locally, using git clone git@github.com:jordanrhall/summix_py.git in a destiniation of your choosing (in terminal)
• In the summix_py directory you've just created, run python setup.py install (in terminal)

Running our Jupyter notebook:

• Open the Jupyter notebook environment by running jupyter notebook (in terminal)
• Once launched, navigate to our "usage-example" folder and then click on the "example-notebook.ipynb" file to launch and run the notebook

Enjoy!