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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(CACIMAR_cols)
export(Caculate_cell_pair_cci_score)
export(Caculate_cell_pair_cci_score2)
export(ChordDiagram)
export(FormatConservedMarkers)
export(Format_Markers_Frac)
export(Heatmap_Cor)
export(Identify_CellType)
export(Identify_ConservedCellTypes)
export(Identify_ConservedMarkers)
export(Identify_ConservedNetworks)
export(Identify_Conserved_CCI)
export(Identify_Conserved_CCI1)
export(Identify_Conserved_CCI2)
export(Identify_Conserved_LR)
export(Identify_Markers)
export(Make_ChordDiagram_data)
export(Make_ChordDiagram_data2)
export(Plot_Celltype.Communication)
export(Plot_MarkersHeatmap)
export(Plot_Species_CellType_Tree)
export(Plot_phylogenetic_tree)
export(add_cellchat_prob)
export(buildHomDatabase)
export(calculate_Weights)
export(conserved_interaction_score)
export(create_sankey)
export(get_average_expression)
export(identify_conserved_gene)
export(identify_conserved_marker)
export(identify_conserved_pair)
export(identify_ct_ConservedNetworks)
export(identify_network_relationships)
export(make_pheatmap_LR_data)
export(make_pheatmap_LR_data1)
export(perform_CCI_analysis)
export(pheatmap_LR1)
export(pheatmap_LR_multi)
export(phylogenetic_tree_circle)
export(plot_interaction_heatmap)
import(igraph)
importFrom(Seurat,FindAllMarkers)
importFrom(Seurat,GetAssayData)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useMart)
importFrom(dplyr,bind_rows)
importFrom(dplyr,group_by)
importFrom(dplyr,group_map)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,layout.circle)
importFrom(methods,is)
importFrom(pheatmap,pheatmap)
importFrom(purrr,map_chr)
importFrom(reshape2,dcast)
importFrom(stats,chisq.test)
importFrom(stats,fisher.test)
importFrom(stats,na.omit)
importFrom(stringr,str_sub)
importFrom(viridisLite,viridis)