DESCRIPTION

Package: revolver
Version: 0.2.0
Date: 2018-12-3
Title: Repeated Evolution in Cancer (REVOLVER)
Type: Package
Author: Giulio Caravagna
Authors@R: c(
    person("Giulio", "Caravagna", email = "gcaravagn@gmail.com", role = c("aut", "cre")),
    person("Ylenia", "Giarratano", email = "ylenia.giarratano@gmail.com", role = "ctb"),
    person("Daniele", "Ramazzotti", email = "daniele.ramazzotti@yahoo.com", role = "ctb"),
    person("Luca", "De Sano", email = "luca.desano@gmail.com", role = "ctb"))
Maintainer: Giulio Caravagna <gcaravagn@gmail.com>
Description: The R package that implements the REVOLVER algorithm to compute Repeated Evolution in Cancer from multi-region sequencing data.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.4),
Imports: 
    crayon,
    parallel,
    doParallel,
    cluster,
    dendextend,
    dynamicTreeCut,
    vegan,
    igraph,
    foreach,
    purrr,
    pio,
    grDevices,
    graphics,
    stats,
    qualvar,
    writexl,
    utils,
    methods
Remotes: caravagn/pio
RoxygenNote: 6.1.0
Suggests: 
    knitr,
    rmarkdown,
    RColorBrewer,
    R.utils,
    entropy,
    ggplot2,
    gridExtra,
    matrixStats,
    matrixcalc,
    nem,
    pheatmap,
    tibble,
    grid
VignetteBuilder: knitr