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Update basic usage
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babayagaofficial committed Aug 21, 2024
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4 changes: 2 additions & 2 deletions docs/basic.rst
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Expand Up @@ -7,9 +7,9 @@ Required input is a text file of a list of paths to fasta files ``genomes_list``
ls -d -1 $PWD/*.fasta > input.txt
Then if `pling_path` is the path to the directory to which you downloaded pling, then usage is
Then usage is

.. code-block:: console
PYTHONPATH=pling_path python pling_path/pling/run_pling.py input.txt output_dir align
pling input.txt output_dir align

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