guids.yaml

study_id: INCLUDE-GUIDs
study_accession:  
study_title: INCLUDE-GUIDs
study_desc: 
url: https://includedcc.org/studies/include-guids
identifier_prefix: https://includedcc.org/fhir/include-guids
dd_prefix: https://includedcc.org/fhir
output_filename: guids
id_colname: Participant ID
whistle_src: _entry.wstl
require_official: True

projection_version: current
# This is where the harmony file will be written 
code_harmonization_dir: harmony/guids

# This is the prefix associated with the final study harmony file
# This must match whatever is used in the whistle code (which is data-harmony
# at this time)
harmony_prefix: data-harmony

# List each file required to support the level of harmonized terms required
# by this project. 
code_harmonization: 
 - harmony/study.csv
 - harmony/dataset.csv
 - harmony/demographics.csv
 - harmony/encounter.csv
 - harmony/misc.csv
 - harmony/specimen.csv

projections: 
  study: projector/study_only
  dataset: projector/dataset
  harmonized: projector/harmonized

curies:
  http://purl.obolibrary.org/obo/hp.owl: HP
  http://purl.obolibrary.org/obo/mondo.owl: MONDO
  http://purl.obolibrary.org/obo/maxo.owl: MAXO
  http://purl.obolibrary.org/obo/ncit.owl: NCIT
env:
  local: dev
  dev: dev
  qa: qa-kf2-inc
  prod: prod-kf2-inc
dataset:
  study_meta: 
    filename: data/tables/INCLUDE-GUIDs/study.csv
    data_dictionary:
      filename: data/dd/study.csv
  study_contacts:
    hidden: true
    filename: data/tables/INCLUDE-GUIDs/contacts.csv
    data_dictionary: 
      filename: data/dd/contacts.csv
    embed:
      dataset: study_meta
      colname: Study Code
  dataset_manifest:
    filename: data/tables/INCLUDE-GUIDs/guids_dataset_manifest_2024-10-08.csv
    data_dictionary: 
      filename: data/dd/dataset_manifest.csv
    embed:
      dataset: dataset_meta
      colname: Dataset External ID
  dataset_meta:
    filename: data/tables/INCLUDE-GUIDs/datasets.csv
    data_dictionary:
      filename: data/dd/dataset_meta.csv
  dataset_file_manifest:
    filename: data/tables/INCLUDE-GUIDs/guids_datafile_manifest_2024-10-08.csv
    data_dictionary:
      filename: data/dd/datafile.csv
active_tables:
  ALL: true
#  family: true