pyproject.toml

[build-system]
requires = ["maturin>=1.5,<2.0"]
build-backend = "maturin"

[project]
name = "zarrs"
requires-python = ">=3.11"
authors = [
    { name = "Ilan Gold" },
    { name = "Lachlan Deakin" },
    { name = "Philipp Angerer" },
]
license = "MIT"
classifiers = [
    "Programming Language :: Rust",
    "Programming Language :: Python :: Implementation :: CPython",
    "Programming Language :: Python :: Implementation :: PyPy",
    "Typing :: Typed",
]
dynamic = ["version"]
dependencies = [
    'asciitree',
    'numpy>=1.24',
    'fasteners',
    'numcodecs[msgpack]>=0.10.0',
    'fsspec>2024',
    'crc32c',
    'zstandard',
    'typing_extensions',
    'donfig',
    'pytest',
    'universal_pathlib>=0.2.0',
    "zarr>=3.0.3",
]

[project.optional-dependencies]
test = [
    "coverage",
    "pytest",
    "pytest-cov",
    "msgpack",
    "lmdb",
    "s3fs",
    "pytest-asyncio",
    "moto[s3]",
    "flask-cors",
    "flask",
    "requests",
    "mypy",
    "hypothesis",
    "pytest-xdist",
]
dev = ["maturin", "pip", "pre-commit"]
doc = ["sphinx>=7.4.6", "myst-parser"]

[tool.maturin]
python-source = "python"
module-name = "zarrs._internal"
features = ["pyo3/extension-module"]

[tool.pytest.ini_options]
minversion = "7"
testpaths = ["tests"]
log_cli_level = "INFO"
xfail_strict = true
asyncio_mode = "auto"
asyncio_default_fixture_loop_scope = "function"
doctest_optionflags = [
    "NORMALIZE_WHITESPACE",
    "ELLIPSIS",
    "IGNORE_EXCEPTION_DETAIL",
]
addopts = [
    "--durations=10",
    "-ra",
    "--strict-config",
    "--strict-markers",
    "--import-mode=importlib",
]
filterwarnings = [
    "error:::zarr.*",
    "ignore:PY_SSIZE_T_CLEAN will be required.*:DeprecationWarning",
    "ignore:The loop argument is deprecated since Python 3.8.*:DeprecationWarning",
    "ignore:Creating a zarr.buffer.gpu.*:UserWarning",
    "ignore:Duplicate name:UserWarning",                                            # from ZipFile
]
markers = ["gpu: mark a test as requiring CuPy and GPU"]

[tool.ruff]
src = ["src", "tests"]

[tool.ruff.format]
docstring-code-format = true

[tool.ruff.lint]
select = [
    "E",       # Error detected by Pycodestyle
    "F",       # Errors detected by Pyflakes
    "W",       # Warning detected by Pycodestyle
    "UP",      # pyupgrade
    "I",       # isort
    "TCH",     # manage type checking blocks
    "TID251",  # Banned imports
    "ICN",     # Follow import conventions
    "PTH",     # Pathlib instead of os.path
    "PLR0917", # Ban APIs with too many positional parameters
    "FBT",     # No positional boolean parameters
    "PT",      # Pytest style
    "SIM",     # Simplify control flow
]
ignore = [
    # line too long -> we accept long comment lines; black gets rid of long code lines
    "E501",
    # module level import not at top of file -> required to circumvent circular imports for Scanpys API
    "E402",
    # E266 too many leading '#' for block comment -> Scanpy allows them for comments into sections
    "E262",
    # allow I, O, l as variable names -> I is the identity matrix, i, j, k, l is reasonable indexing notation
    "E741",
]
[tool.ruff.lint.per-file-ignores]
"**/*.pyi" = ["ICN001"]
[tool.ruff.lint.isort]
known-first-party = ["zarrs"]