config.toml

publishdir = "docs"
static = "/static"
builddrafts = false
# Replace this with your website URL
baseurl = "https://ihh.github.io/"
canonifyurls = true
theme = "hugo-academic-group"
title = "Holmes Lab"
math = true
copyright = "© Ian Holmes, 2020 "

[taxonomies]
category = "categories"
tag = "tags"


[params]
  description = "Website of Ian Holmes research group"
  author = "Ian Holmes"
  email = "ihh@berkeley.edu"
  address = "381 Stanley Hall, University of California, Berkeley"

  slogan = "Holmes Lab"
  slogan_text = "Computational Biology Research"

  [[params.slogan_columns]]
    text =  "Genome sequences are fundamental to many fields: a living history of molecular evolution, a reference frame for medicine, a substrate for bioengineering. Our UC Berkeley-based team makes the software that empowers genome scientists to decode, analyze, annotate, and design these sequences."
    link = "/#projects"
    link_text = "Current projects"
    weight = 1

  [[params.slogan_columns]]
    text =  "Our group is a mix of academics and research software engineers, working on intersecting projects. We develop new algorithms and models, gather data on natural and synthetic sequences, and develop code to visualize and explore data."
    link = "/#members"
    link_text = "Meet the team"
    weight = 1

  [[params.slogan_columns]]
    text =  "We use techniques from Bayesian statistics and deep learning through to modern web development. Recent papers describe software for annotating genomes collaboratively over the web, reconstructing ancestral viruses, and designing protein libraries for directed evolution."
    link = "/#publications"
    link_text = "Selected papers"
    weight = 1

  # Selected Publications section.
  [params.publications_selected]
    detailed_list = true
    title = "Selected Publications"
    subtitle = ""

  # Publications section.
  # Section will only be displayed if there are publications in `content/publication/`.
  [params.publications]
    count = 5
    detailed_list = false
    title = "Publications"
    subtitle = ""
    str_all = "More Publications"

  # Posts section.
  # Section will only be displayed if there are posts in `content/post/`.
  [params.posts]
    count = 2
    title = "Blog"
    subtitle = ""
    str_all = "More Posts"
    str_read_more = "Read more"

  # Projects section.
  # Section will only be displayed if there are projects in `content/project/`.
  [params.projects]
    title = "Projects"
    subtitle = ""
    count = 4
    str_all = "More Projects"
  
  # Vacancies section
  # Section will only be displayed if there are valid vacancies in `content/vacancy`
  [params.vacancies]
    title = "Vacancies"
    subtitle = ""
    count = 3
    str_all = "More Vacancies"

  # Contact section.
  [params.contact]
    enable = true
    title = "Contact"
    subtitle = ""
    autolink = false  # Automatically link email and phone?

  # Navigation Links
  #   The weight parameter defines the order that the links will appear in.

  [[menu.main]]
      name = "Home"
      url = "/#top"
      weight = 1

  [[menu.main]]
      name = "Research"
      url = "/research"
      weight = 2

  [[menu.main]]
      name = "Publications"
      url = "/#publications"
      weight = 3

    [[menu.main]]
      name = "Projects"
      url = "/#projects"
      weight = 4

  [[menu.main]]
      name = "Members"
      url = "/#members"
      weight = 5

  [[menu.main]]
      name = "Blog"
      url = "/#posts"
      weight = 6


  [[menu.main]]
      name = "Contact"
      url = "/#contact"
      weight = 7