nextNEOpi_v1.4.1

This release contains some improvements and software updates

Updates

• GATK 4.5.0.0
• CNVkit 0.9.11
• BLAST 2.15
• multiqc 1.21
• pVACtools 4.1.1(fixes #43, #60, #66)
• VEP 111.0

Improvements

• remove sequenza from nextNEOpiENV and use it in separate ENVS
• switch from SGE to slurm in cluster profile example
• set process memory defaults for resource reservation to avoid OOM kills
• set default process time directive for max process execution time
• refine process CPU directive settings for
• changed the way how pvacseq results are concatenated. Now a python script using pandas is doing the job.

Fixes

• fix custom HLA file handling (fixes and closes #70, thanks to @mantczakaus)
• added custom HLA file example (closes #72)
• fix issued with pVACtools (#43, #60, #66)