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1. nextNEOpi nextNEOpi Public

   nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

   Nextflow 69 24

2. NeoFuse NeoFuse Public

   NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

   Shell 19 9

3. Immunophenogram Immunophenogram Public

   R 40 26

4. quanTIseq quanTIseq Public

   a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data

   R 18 10

5. infercnvpy infercnvpy Public

   Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

   Python 145 27

6. miopy miopy Public

   HTML 1 1