Ensemble models for differential analysis

This repository contains self-paced tutorials related to the short course ‘Omics Data Science,’ offered by the Mallick Lab.

Source files for the Hugo personal webpage generator

The repository houses the analysis and simulation codes from the Bayesian multiview project.

Integrated Machine Learning for Multi-omics Classification and Prediction

Meta-network-analysis of microbiome studies

Differential analysis of multi-omics data based on the Tweedie distribution

Bayesian Reciprocal Regularization

This repository houses all the analysis codes described in the Bayesian nonclinical review paper published in Communications in Statistics – Case Studies and Data Analysis.

An R package with Himel Mallick's personal R code

The repository houses the R codes related to the project 'Marginalized Zero-inflated Count Regression'.

Tweedie Spatial Omics Analysis Toolbox

This repository houses preprocessing scripts to enable efficient downstream analysis of omics data.

Simulation engine to generate synthetic multi-omics datasets with arbitrary association structure

This repository houses the R codes for conformal inference in multi-omics intergration and multiview analysis.

This repository houses the analysis codes from the Bayesian preclinical tutorial paper led by the DIA/ASA-BIOP Nonclinical Bayesian Working Group members.

Analysis codes from the Tweedie single-cell paper.

Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.

Large-scale Benchmarking of Single-cell Differential Expression Analysis Methods

A curated list of early career data science student paper awards and travel grants.

Large-scale Benchmarking of Microbial Multivariable Association Methods

Unified Bayesian Regularization via Scale Mixture of Uniform Distributions

Group Regularization for Zero-inflated Count Regression Models

A Multicollinearity-adjusted Adaptive LASSO for Zero-inflated Count Regression