deleteNS

TODO.md

@@ -30,30 +30,27 @@
 
 ## bugs
 
+- highlight multiline comments in Heta dictionary and array (with/without comma)
+- multiple single-line comments in dict result in error
+
 ## features
 
-- write reusable `Build` class
+- atStart to exports: Matlab, DBSolve
 - checking legal functions inside Expressions and functionDefinition
 - `#defineFunction`: circular dependences within functions, internal functions, different exports, functionDef vs units
-- calculate units for pow function
+- write reusable `Build` class
 - remove unnecessary rules in export
 - checking units for diff eq
 - check unit consistency for Species: amount/area if compartment is area
 - AnyUnit for zero numbers
-- highlight multiline comments in Heta dictionary and array (with/without comma)
-- atStart to exports: Matlab, DBSolve
 - remove `isAmount`, `compartment` properties from `@Reaction`
 
 ## ideas
 
 - generation of 'platform.yml' by `heta init`
-- deprecated `include` statement
-- `#move`, `#moveNS`
-- `#deleteNS` action
 - `#move`, `#moveNS`
-- remove support of `include` statement is deprecated, use `#include` action (v0.7.0)
+- `include` statement is deprecated, use `#include` action (v0.8.0)
 - check file format for modules
-- syntax highlight in web
 - add "ignoreCompartment" property in Species
 - do not translate base units in SBML export like second => _second
 - automatic creation of modifiers in SBML

package.json

@@ -4,7 +4,7 @@
   "description": "Programming platform for Quantitative Systems Pharmacology modeling in NodeJS",
   "main": "src/index.js",
   "scripts": {
-    "test:dev": "mocha test/check-units/calc-unit --config=./test/.mocharc.json",
+    "test:dev": "mocha test/container/container-actions --config=./test/.mocharc.json",
     "test": "mocha test --config=./test/.mocharc.json",
     "jsdoc": "jsdoc -r -c .jsdoc.json --readme api-references.md -d docs/dev src",
     "test:cov": "nyc --reporter=lcov npm run test",

src/container/actions.js

@@ -323,6 +323,18 @@ Container.prototype.setNS = function(q = {}){
   this.logger.info(`Namespace "${space}" was set as "${typeString}"`);
 };
 
+Container.prototype.deleteNS = function(_q = {}) {
+  let q = Object.assign({space: 'nameless'}, _q);
+  if (this.namespaceStorage.has(q.space)) {
+    this.namespaceStorage.delete(q.space);
+    this.logger.info(`Namespace "${q.space}" was deleted.`);
+  } else {
+    this.logger.error(`Namespace "${q.space}" is not found.`);
+  }
+
+  return this;
+};
+
 /**
  * Clones and rename all components to another space.
  * 

src/sbml-export/index.js

@@ -72,6 +72,14 @@ class SBMLExport extends AbstractExport {
     } else {
       try {
         listOfUnitDefinitions = ns.getUniqueUnits()
+          /*
+          .filter((units) => {
+            return units.length !== 1 
+              || legalUnits.indexOf(units[0].kind) < 0
+              || units[0].exponent !== 1
+              || units[0].multiplier !== 1;
+          })
+          */
           .map((units) => {
             return units
               .toXmlUnitDefinition(legalUnits, { nameStyle: 'string', simplify: true });

test/container/container-actions.js

@@ -215,3 +215,29 @@ describe('Unit tests for Container load', () => {
     c.logger.resetErrors();
   });
 });
+
+describe('Test deleting NS', () => {
+  let c = new Container();
+
+  it('Create NS', () => {
+    c.setNS({space: 'one'});
+    c.setNS({space: 'two'});
+
+    expect(c.namespaceStorage.size).to.equal(3);
+  });
+
+  it('Delete NS one', () => {
+    c.deleteNS({space: 'one'});
+
+    expect(c.namespaceStorage.size).to.equal(2);
+  });
+
+  it('Delete not existed NS', () => {
+    c.deleteNS({space: 'one'});
+    c.deleteNS({space: 'three'});
+
+    expect(c.logger.hasErrors).to.be.true;
+    expect(c.namespaceStorage.size).to.equal(2);
+  });
+
+});