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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export()
export(buildCellTypeIndex)
export(cellTypeMarkers)
export(cellTypeNames)
export(evaluateMarkers)
export(findCellTypeSpecificities)
export(findCellTypes)
export(findGeneSignatures)
export(findHouseKeepingGenes)
export(findSimilarGenes)
export(findTissueSpecificities)
export(hyperQueryCellTypes)
export(loadObject)
export(markerGenes)
export(mergeDataset)
export(mergeSCE)
export(saveObject)
export(scfindGenes)
export(scfindShiny)
export(scfindShinyServer)
export(ui.scfind)
exportClasses(SCFind)
importFrom(DT,dataTableOutput)
importFrom(DT,datatable)
importFrom(DT,renderDataTable)
importFrom(Rcpp,cpp_object_initializer)
importFrom(Rcpp,loadModule)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,element_text)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,alpha)
importFrom(ggplot2,labs)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,guides)
importFrom(ggplot2,guide_legend)
importFrom(grDevices,rainbow)
importFrom(graphics,plot)
importFrom(hash,hash)
importFrom(hash,keys)
importFrom(hash,values)
importFrom(methods,new)
importFrom(shiny,HTML)
importFrom(shiny,a)
importFrom(shiny,actionButton)
importFrom(shiny,actionLink)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,column)
importFrom(shiny,fluidPage)
importFrom(shiny,fluidRow)
importFrom(shiny,h1)
importFrom(shiny,h2)
importFrom(shiny,h3)
importFrom(shiny,h4)
importFrom(shiny,tags)
importFrom(shiny,icon)
importFrom(shiny,tabsetPanel)
importFrom(shiny,tabPanel)
importFrom(shiny,selectInput)
importFrom(shiny,navbarMenu)
importFrom(shiny,navbarPage)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,plotOutput)
importFrom(shiny,reactive)
importFrom(shiny,reactiveVal)
importFrom(shiny,renderPlot)
importFrom(shiny,renderPrint)
importFrom(shiny,renderText)
importFrom(shiny,shinyApp)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,stopApp)
importFrom(shiny,textInput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateCheckboxGroupInput)
importFrom(shiny,verbatimTextOutput)
importFrom(shiny,sliderInput)
importFrom(stats,aggregate)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,setNames)
importFrom(utils,setTxtProgressBar)
importFrom(utils,stack)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,unstack)
useDynLib(scfind)