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Make dyntab expandable #1017

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21 changes: 21 additions & 0 deletions src/hdmf/common/table.py
Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,10 @@
import numpy as np
import pandas as pd
import itertools
from typing import Type

from . import register_class, EXP_NAMESPACE
from ..backends.hdf5.h5_utils import H5DataIO
from ..container import Container, Data
from ..data_utils import DataIO, AbstractDataChunkIterator
from ..utils import docval, getargs, ExtenderMeta, popargs, pystr, AllowPositional, check_type
Expand Down Expand Up @@ -1323,6 +1325,25 @@ def copy(self):
colnames=self.colnames)
return self.__class__(**kwargs)

def make_expandable(self, data_io_class: Type[DataIO] = H5DataIO, data_io_kwargs: dict = None):
"""

Parameters
----------
data_io_class: Type[DataIO], default=H5DataIO
data_io_kwargs: dict, optional
Keyword arguments to pass to the data_io_class. If None, defaults to dict(shape=(None, *data.shape[1:]))
"""

if data_io_kwargs is None:
data_io_kwargs = dict()

for column in self.columns + [self.id]:
shape = column.data.shape
kwargs = dict(shape=(None, *shape[1:]))
kwargs.update(**data_io_kwargs)
column.set_data_io(data_io_class=data_io_class, data_io_kwargs=kwargs)


@register_class('DynamicTableRegion')
class DynamicTableRegion(VectorData):
Expand Down