cov

src/hdmf/term_set.py

@@ -334,7 +334,7 @@ def load_termset_config(self,config_path):
         """
         try:
             import yaml
-        except ImportError:
+        except ImportError: # pragma: no cover
             msg = "Install yaml."
             raise ValueError(msg)
 

tests/unit/hdmf_config2.yaml

@@ -0,0 +1,13 @@
+namespaces:
+  hdmf-common:
+    version: 3.12.2
+    data_types:
+      Data:
+        description: example_test_term_set.yaml
+      EnumData:
+        description: example_test_term_set.yaml
+  namespace2:
+    version: 0
+    data_types:
+      MythicData:
+        description: example_test_term_set.yaml

tests/unit/test_term_set.py

@@ -1,8 +1,8 @@
 import os
 
-from hdmf.term_set import TermSet, TermSetWrapper
+from hdmf.term_set import TermSet, TermSetWrapper, TermSetConfigurator
 from hdmf.testing import TestCase, remove_test_file
-from hdmf.common import VectorData
+from hdmf.common import VectorData, unload_termset_config
 import numpy as np
 
 
@@ -215,3 +215,56 @@ def test_wrapper_extend_error(self):
         data_obj = VectorData(name='species', description='...', data=self.wrapped_list)
         with self.assertRaises(ValueError):
             data_obj.extend(['bad_data'])
+
+class TestTermSetConfig(TestCase):
+    def setUp(self):
+        if not REQUIREMENTS_INSTALLED:
+            self.skipTest("optional LinkML module is not installed")
+
+    def tearDown(self):
+        unload_termset_config()
+
+    def test_config_path(self):
+        path = 'tests/unit/hdmf_config.yaml'
+        tc = TermSetConfigurator(path=path)
+        self.assertEqual(tc.path, [path])
+
+    def test_get_config(self):
+        path = 'tests/unit/hdmf_config.yaml'
+        tc = TermSetConfigurator(path=path)
+        self.assertEqual(tc.get_config('VectorData', 'hdmf-common'),
+                                      {'description': 'example_test_term_set.yaml'})
+
+    def test_get_config_namespace_error(self):
+        path = 'tests/unit/hdmf_config.yaml'
+        tc = TermSetConfigurator(path=path)
+        with self.assertRaises(ValueError):
+            tc.get_config('VectorData', 'hdmf-common11')
+
+    def test_get_config_container_error(self):
+        path = 'tests/unit/hdmf_config.yaml'
+        tc = TermSetConfigurator(path=path)
+        with self.assertRaises(ValueError):
+            tc.get_config('VectorData11', 'hdmf-common')
+
+    def test_already_loaded_path_error(self):
+        path = 'tests/unit/hdmf_config.yaml'
+        tc = TermSetConfigurator(path=path)
+        with self.assertRaises(ValueError):
+            tc.load_termset_config(config_path=path)
+
+    def test_load_two_unique_configs(self):
+        path = 'tests/unit/hdmf_config.yaml'
+        path2 = 'tests/unit/hdmf_config2.yaml'
+        tc = TermSetConfigurator(path=path)
+        tc.load_termset_config(config_path=path2)
+        self.assertEqual(tc.path, [path, path2])
+
+    # def test_append_namespace(self):
+    #     pass
+    #
+    # def test_replace_config(self):
+    #     pass
+    #
+    # def test_append_config(self):
+    #     pass