From f90b02b9b52da91a785c9dfdc13828dea644b349 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 20 Aug 2024 00:26:01 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 022df0d27c3143846d80dad541b366976ef09110
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-07-15 15:32:10 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 320a6dfe95050dc170786cc93cf011322f954b42
Branch  : main
Author  : cgaylord-gwu <79278326+cgaylord-gwu@users.noreply.github.com>
Time    : 2024-07-15 15:31:18 +0000
Message : Update 01-tidiness.md

Add comments about using structured database
---
 01-tidiness.html                    |  6 +++---
 02-project-planning.html            |  2 +-
 03-ncbi-sra.html                    |  4 ++--
 404.html                            |  4 ++--
 CODE_OF_CONDUCT.html                |  2 +-
 LICENSE.html                        |  2 +-
 aio.html                            | 10 +++++-----
 data.html                           |  2 +-
 discuss.html                        |  2 +-
 images.html                         |  4 ++--
 index.html                          |  4 ++--
 instructor-notes.html               |  4 ++--
 instructor/01-tidiness.html         |  6 +++---
 instructor/02-project-planning.html |  2 +-
 instructor/03-ncbi-sra.html         |  4 ++--
 instructor/404.html                 |  4 ++--
 instructor/CODE_OF_CONDUCT.html     |  2 +-
 instructor/LICENSE.html             |  2 +-
 instructor/aio.html                 | 10 +++++-----
 instructor/data.html                |  2 +-
 instructor/discuss.html             |  2 +-
 instructor/images.html              |  4 ++--
 instructor/index.html               |  4 ++--
 instructor/instructor-notes.html    |  4 ++--
 instructor/key-points.html          |  4 ++--
 instructor/old-ncbi.html            |  2 +-
 instructor/profiles.html            |  4 ++--
 instructor/reference.html           |  2 +-
 key-points.html                     |  4 ++--
 old-ncbi.html                       |  2 +-
 pkgdown.yml                         |  2 +-
 profiles.html                       |  4 ++--
 reference.html                      |  2 +-
 33 files changed, 59 insertions(+), 59 deletions(-)

diff --git a/01-tidiness.html b/01-tidiness.html
index a270eddc..61d5f2f3 100644
--- a/01-tidiness.html
+++ b/01-tidiness.html
@@ -358,7 +358,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Types of files and information you have generated:</p>
 <ul><li>Spreadsheet or tabular data with the data from your experiment and
@@ -489,7 +489,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
 Carpentry Ecology spreadsheet lesson</a>. Not all are present in this
@@ -598,7 +598,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/organization-genomics/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-07-15",
-  "datePublished": "2024-08-13"
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/02-project-planning.html b/02-project-planning.html
index 42590153..9d8556a7 100644
--- a/02-project-planning.html
+++ b/02-project-planning.html
@@ -608,7 +608,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-04",
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+  "datePublished": "2024-08-20"
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diff --git a/03-ncbi-sra.html b/03-ncbi-sra.html
index 172b9522..32f8082a 100644
--- a/03-ncbi-sra.html
+++ b/03-ncbi-sra.html
@@ -470,7 +470,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
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 </button>
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 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
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@@ -607,7 +607,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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diff --git a/404.html b/404.html
index fdf9b605..99e7b469 100644
--- a/404.html
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diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index a4b98a00..1e95a99e 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -358,7 +358,7 @@ <h1>Contributor Code of Conduct</h1>
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
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diff --git a/LICENSE.html b/LICENSE.html
index 84b23560..7eac8dc8 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -409,7 +409,7 @@ <h1>Licenses</h1>
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
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diff --git a/aio.html b/aio.html
index 038963bc..97b3e10b 100644
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 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
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-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
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@@ -532,7 +532,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
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-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
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@@ -1061,7 +1061,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
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-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
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 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
@@ -1202,8 +1202,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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diff --git a/data.html b/data.html
index fcbe4a7c..a25f1459 100644
--- a/data.html
+++ b/data.html
@@ -438,7 +438,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
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diff --git a/discuss.html b/discuss.html
index 5448b26a..1ee5f2d2 100644
--- a/discuss.html
+++ b/discuss.html
@@ -351,7 +351,7 @@ <h1>Discussion</h1>
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diff --git a/images.html b/images.html
index 18898695..03d1db6e 100644
--- a/images.html
+++ b/images.html
@@ -405,8 +405,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
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-  "dateModified": "2024-08-13",
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diff --git a/index.html b/index.html
index 89b93044..928d8523 100644
--- a/index.html
+++ b/index.html
@@ -405,8 +405,8 @@ <h3 class="callout-title">For Instructors<a class="anchor" aria-label="anchor" h
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-  "dateModified": "2024-08-13",
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diff --git a/instructor-notes.html b/instructor-notes.html
index f618551c..0378b439 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -534,8 +534,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
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diff --git a/instructor/01-tidiness.html b/instructor/01-tidiness.html
index c0007533..eda5be3a 100644
--- a/instructor/01-tidiness.html
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@@ -491,7 +491,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
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index 998c07d5..7083568d 100644
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@@ -610,7 +610,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
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@@ -609,7 +609,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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index d56d4824..8d5e13e3 100644
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diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
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 <div class="accordion-body">
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 </button>
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+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
 Carpentry Ecology spreadsheet lesson</a>. Not all are present in this
@@ -1070,7 +1070,7 @@ <h3 class="callout-title">Discussion<a class="anchor" aria-label="anchor" href="
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
@@ -1211,8 +1211,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
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diff --git a/instructor/data.html b/instructor/data.html
index 71a1c1b7..fbae9c78 100644
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   "dateModified": "2023-05-02",
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diff --git a/instructor/discuss.html b/instructor/discuss.html
index a146e019..36dd26e9 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -353,7 +353,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-08-13"
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/instructor/images.html b/instructor/images.html
index 20612a43..0ad65acf 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -411,8 +411,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/instructor/index.html b/instructor/index.html
index c04088ea..9fef0a1a 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -448,8 +448,8 @@ <h3 class="callout-title">For Instructors<a class="anchor" aria-label="anchor" h
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   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 42916f48..03037b1f 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -543,8 +543,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 0cc9394a..c93bc509 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -398,8 +398,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/instructor/old-ncbi.html b/instructor/old-ncbi.html
index 9eada4d5..98bd9d17 100644
--- a/instructor/old-ncbi.html
+++ b/instructor/old-ncbi.html
@@ -375,7 +375,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-08-13"
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/instructor/profiles.html b/instructor/profiles.html
index 744dc7bc..59035483 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -309,8 +309,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/instructor/reference.html b/instructor/reference.html
index 7f1c9c83..6809b5ba 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -451,7 +451,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-08-13"
+  "datePublished": "2024-08-20"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 76725992..2351a501 100644
--- a/key-points.html
+++ b/key-points.html
@@ -392,8 +392,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
   </script><script>
diff --git a/old-ncbi.html b/old-ncbi.html
index 3ce570b9..4e123f32 100644
--- a/old-ncbi.html
+++ b/old-ncbi.html
@@ -373,7 +373,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-08-13"
+  "datePublished": "2024-08-20"
 }
 
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diff --git a/pkgdown.yml b/pkgdown.yml
index 57fcc804..e3069c04 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.0
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-08-13T00:26Z
+last_built: 2024-08-20T00:25Z
diff --git a/profiles.html b/profiles.html
index 87c684e3..841fa290 100644
--- a/profiles.html
+++ b/profiles.html
@@ -309,8 +309,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-08-13",
-  "datePublished": "2024-08-13"
+  "dateModified": "2024-08-20",
+  "datePublished": "2024-08-20"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 8f399f0d..b3d96b51 100644
--- a/reference.html
+++ b/reference.html
@@ -449,7 +449,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-08-13"
+  "datePublished": "2024-08-20"
 }
 
   </script><script>