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Overlapping Junction Counts #11

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nigel9155 opened this issue Nov 27, 2018 · 5 comments
Open

Overlapping Junction Counts #11

nigel9155 opened this issue Nov 27, 2018 · 5 comments
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enhancement help wanted

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@nigel9155
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wdfy3_0
@dgarrimar
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Hi @nigel9155,

yes, it may happen in some cases, we will work to solve that. In the meantime, if you are just not interested in displaying those reads, that seem very few, just increase the minimum support using the -M option so that they do not appear in the plot.

@archana433 archana433 mentioned this issue May 11, 2020
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emi80 added a commit that referenced this issue Jul 16, 2020
@emi80
Add padding between junction arcs to avoid overlapping - #11
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@emi80
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emi80 commented Jul 16, 2020 •
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Hi @nigel9155,

I have updated the code to address this. You can find the changes in the arc-overlap branch. Could you please test it and let me know if it works for you?

Best,
Emilio

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stale bot commented Jan 21, 2021

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

@stale stale bot added the stale Issues with no recent activity label Jan 21, 2021
@dgarrimar dgarrimar added help wanted and removed stale Issues with no recent activity labels Jan 22, 2021
@dgarrimar
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Another option may be using ggrepel.

dgarrimar pushed a commit that referenced this issue Mar 19, 2021
@emi80 @dgarrimar
Add padding between junction arcs to avoid overlapping - #11
890cf40
dgarrimar added a commit that referenced this issue Mar 19, 2021
@dgarrimar
Random arc position to avoid overlapping - #11
f9a2180
dgarrimar added a commit that referenced this issue Mar 19, 2021
@dgarrimar
Random arc position to avoid overlapping - #11
6211165
dgarrimar added a commit that referenced this issue Mar 19, 2021
@dgarrimar
Random arc position to avoid overlapping - #11
f33d4c5
dgarrimar pushed a commit that referenced this issue Mar 19, 2021
@emi80 @dgarrimar
Add padding between junction arcs to avoid overlapping - #11
79a38a7
dgarrimar added a commit that referenced this issue Mar 19, 2021
@dgarrimar
Random arcs position to avoid overlapping - #11, update examples
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@dgarrimar
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dgarrimar commented Mar 19, 2021 •
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I tried another possibility, based on selecting a random location for the arcs, and added it in the arc-overlap branch. Still sub-optimal, but reduces overlapping substantially.

emi80 added a commit that referenced this issue Mar 24, 2021
@emi80
Add padding between junction arcs to avoid overlapping - #11
6cc291e
emi80 pushed a commit that referenced this issue Mar 24, 2021
@dgarrimar @emi80
Random arcs position to avoid overlapping - #11, update examples
356b4f6
emi80 added a commit that referenced this issue Mar 24, 2021
@emi80
Add padding between junction arcs to avoid overlapping - #11
677a0e2
emi80 pushed a commit that referenced this issue Mar 24, 2021
@dgarrimar @emi80
Random arcs position to avoid overlapping - #11, update examples
a03215c
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@emi80 @nigel9155 @dgarrimar