apply some Gigascience copyeditor changes (#75)

[ci skip] This build is based on 084aa98. This commit was created by the following CI build and job: https://github.com/greenelab/xswap-manuscript/commit/084aa987338d038f11579641fa4b9e30e6e74826/checks https://github.com/greenelab/xswap-manuscript/actions/runs/7506777009
greenelab · Jan 12, 2024 · 194bfe2 · 194bfe2
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diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/greenelab/xswap-manuscript/tree/gh-pages) branch hosts the contents of this directory at <https://greenelab.github.io/xswap-manuscript/>.
-The permalink for this webpage version is <https://greenelab.github.io/xswap-manuscript/v/55ccf900e5d69b9defd93e7b4341ae2cf3612720/>.
+The permalink for this webpage version is <https://greenelab.github.io/xswap-manuscript/v/084aa987338d038f11579641fa4b9e30e6e74826/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://greenelab.github.io/xswap-manuscript/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`55ccf900e5d69b9defd93e7b4341ae2cf3612720`](https://github.com/greenelab/xswap-manuscript/commit/55ccf900e5d69b9defd93e7b4341ae2cf3612720).
+[`084aa987338d038f11579641fa4b9e30e6e74826`](https://github.com/greenelab/xswap-manuscript/commit/084aa987338d038f11579641fa4b9e30e6e74826).
diff --git a/index.html b/index.html
diff --git a/manuscript.pdf b/manuscript.pdf
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