apply some Gigascience copyeditor changes (#75)

[ci skip]

This build is based on
084aa98.

This commit was created by the following CI build and job:
https://github.com/greenelab/xswap-manuscript/commit/084aa987338d038f11579641fa4b9e30e6e74826/checks
https://github.com/greenelab/xswap-manuscript/actions/runs/7506777009

spelling-error-locations.txt

@@ -15,9 +15,11 @@ content/02.body.md:19:hetionet
 content/02.body.md:19:xswap
 content/02.body.md:22:hetionet
 content/02.body.md:23:xswap
+content/02.body.md:41:nonsystematic
 content/02.body.md:44:nonspecificity
 content/02.body.md:46:Gillis
 content/02.body.md:46:multifunctionality
+content/02.body.md:46:Pavlidis
 content/02.body.md:47:bioinformatics
 content/02.body.md:50:uninsightful
 content/02.body.md:60:subsampled
@@ -66,7 +68,7 @@ content/02.body.md:146:xswap
 content/02.body.md:153:Hetionet
 content/02.body.md:157:AUROC
 content/02.body.md:164:curation
-content/02.body.md:164:PPI
+content/02.body.md:164:PPIs
 content/02.body.md:164:TF
 content/02.body.md:164:TG
 content/02.body.md:165:PPI
@@ -79,12 +81,15 @@ content/02.body.md:166:TG
 content/02.body.md:167:PPI
 content/02.body.md:167:TF
 content/02.body.md:167:TG
+content/02.body.md:169:coauthorship
 content/02.body.md:170:bioinformatics
 content/02.body.md:170:bioRxiv
 content/02.body.md:170:bioRxiv
+content/02.body.md:170:coauthorship
 content/02.body.md:170:preprints
 content/02.body.md:170:Rxivist
 content/02.body.md:170:zenodo
+content/02.body.md:171:coauthorship
 content/02.body.md:173:generalizability
 content/02.body.md:187:XSwap
 content/02.body.md:190:xswap
@@ -105,15 +110,20 @@ content/02.body.md:208:TF
 content/02.body.md:208:TG
 content/02.body.md:209:TF
 content/02.body.md:209:TG
+content/02.body.md:210:coauthorship
+content/02.body.md:210:coauthorship
 content/02.body.md:210:PPI
 content/02.body.md:210:TF
 content/02.body.md:210:TG
+content/02.body.md:211:coauthorship
 content/02.body.md:211:PPI
 content/02.body.md:211:TF
 content/02.body.md:211:TG
 content/02.body.md:216:PPI
 content/02.body.md:216:TF
 content/02.body.md:216:TG
+content/02.body.md:218:coauthorship
+content/02.body.md:218:coauthorship
 content/02.body.md:223:Subsampled
 content/02.body.md:224:xswap
 content/02.body.md:228:xswap
@@ -148,8 +158,9 @@ content/02.body.md:281:unsampled
 content/02.body.md:282:AUROC
 content/02.body.md:286:bioinformatics
 content/02.body.md:286:bioRxiv
+content/02.body.md:286:coauthorship
 content/02.body.md:286:PPI
-content/02.body.md:286:pre
+content/02.body.md:286:preprint
 content/02.body.md:286:TF
 content/02.body.md:286:TG
 content/02.body.md:289:AUROC
@@ -158,9 +169,9 @@ content/02.body.md:290:AUROC
 content/02.body.md:290:TF
 content/02.body.md:290:TG
 content/02.body.md:291:AUROC
+content/02.body.md:291:coauthorship
 content/02.body.md:297:repurposing
 content/02.body.md:300:generalizable
-content/02.body.md:303:underly
 content/02.body.md:306:PPI
 content/02.body.md:313:PPI
 content/02.body.md:317:xswap
@@ -181,13 +192,12 @@ content/02.body.md:343:auroc
 content/02.body.md:343:AUROC
 content/02.body.md:343:PPI
 content/02.body.md:344:unpermuted
-content/02.body.md:351:eg
-content/02.body.md:351:eg
 content/02.body.md:351:Jaccard
 content/02.body.md:353:Adamic
 content/02.body.md:353:Jaccard
 content/02.body.md:353:RWR
 content/02.body.md:353:unpermuted
+content/02.body.md:361:nonspecificity
 content/02.body.md:378:auroc
 content/02.body.md:384:auroc
 content/02.body.md:384:unpermuted

spelling-errors.txt

@@ -5,7 +5,7 @@ AlD
 algo
 algodiagram
 antiparallel
-auroc
+AUROC
 Barabási
 bioinformatics
 bioRxiv
@@ -17,6 +17,7 @@ CCpG
 CcSE
 CdG
 citable
+coauthorship
 CoMoFinder
 CrC
 CSG
@@ -28,7 +29,6 @@ Diaconis
 directedness
 downregulates
 DSH
-eg
 Eisai
 Erdős
 ergodic
@@ -61,9 +61,12 @@ MWN
 MZ
 Nagle
 nonspecificity
+nonsystematic
 partite
+Pavlidis
 PPI
-pre
+PPIs
+preprint
 preprints
 proteome
 pseudocode
@@ -80,13 +83,12 @@ subsampled
 TF
 TG
 Translational
-underly
-undirected
+Undirected
 uninsightful
 unpermuted
 unsampled
 Vagelos
 WaRSwap
-xswap
+XSwap
 Zenodo
 Zietz