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metadata.yaml
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---
title: "The probability of edge existence due to node degree: a baseline for network-based predictions"
keywords:
- networks
- heterogeneous
- knowledge graphs
- node degree
- edge prediction
- edge prior
- permutation
- xswap
- bioinformatics
- python
lang: en-US
date: 2024-02-07
authors:
- github: zietzm
name: Michael Zietz
initials: MZ
orcid: 0000-0003-0539-630X
twitter: ZietzMichael
email: michael.zietz@gmail.com
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA
funders:
- Roy and Diana Vagelos Scholars Program in the Molecular Life Sciences
- the Gordon and Betty Moore Foundation (GBMF4552)
roles:
- Conceptualization
- Data curation
- Formal analysis
- Investigation
- Methodology
- Project administration
- Software
- Visualization
- Writing – original draft
- Writing – review & editing
- github: dhimmel
name: Daniel S. Himmelstein
initials: DSH
orcid: 0000-0002-3012-7446
twitter: dhimmel
email: daniel.himmelstein@gmail.com
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Related Sciences, Denver, CO 80202, USA
funders:
- Pfizer Worldwide Research, Development, and Medical
- the Gordon and Betty Moore Foundation (GBMF4552)
roles:
- Conceptualization
- Data curation
- Formal analysis
- Investigation
- Methodology
- Project administration
- Resources
- Software
- Supervision
- Visualization
- Writing – review & editing
- github: kkloste
name: Kyle Kloster
initials: KAK
orcid: 0000-0001-5678-7197
twitter: kylekloster
email: kyle.kloster@gmail.com
affiliations:
- Carbon, Inc., Redwood City, CA 94063, USA
- Department of Computer Science, North Carolina State University, Raleigh, NC 27606, USA
funders: the Gordon and Betty Moore Foundation (GBMF4560)
roles:
- Conceptualization
- Methodology
- github: chrsunwil
name: Christopher Williams
initials: CW
orcid: 0000-0002-5613-3051
email: chrwill@sas.upenn.edu
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
roles:
- Methodology
- Software
- github: naglem
name: Michael W. Nagle
initials: MWN
orcid: 0000-0002-4677-7582
twitter: MikeNagle84
email: michael.nagle@pfizer.com
affiliations:
- Internal Medicine Research Unit, Pfizer Worldwide Research, Development, and Medical, Cambridge, MA 02139, USA
- Integrative Biology, Internal Medicine Research Unit, Worldwide Research, Development, and Medicine, Pfizer Inc., Cambridge, MA 02139, USA
- Human Biology Integration Foundation, Deep Human Biology Learning, Eisai Inc., Cambridge, MA 02140, USA
roles:
- Investigation
- Resources
- github: cgreene
name: Casey S. Greene
initials: CSG
orcid: 0000-0001-8713-9213
twitter: greenescientist
email: casey.s.greene@cuanschutz.edu
corresponding: true
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA
- Center for Health AI, University of Colorado School of Medicine, Aurora, CO 80045, USA
funders:
- Pfizer Worldwide Research, Development, and Medical
- the Gordon and Betty Moore Foundation (GBMF4552)
- the National Institutes of Health (R01 HG010067)
roles:
- Conceptualization
- Funding acquisition
- Investigation
- Methodology
- Project administration
- Resources
- Supervision
- Writing – review & editing
preprint_citation: doi:10.1101/2023.01.05.522939
journal_citation: doi:10.1093/gigascience/giae001