From f5e03353a531cd9e17062dbe51b26ad1dd5f8810 Mon Sep 17 00:00:00 2001 From: Steven Foltz Date: Mon, 31 Oct 2022 13:05:04 -0400 Subject: [PATCH] Mention seurat --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index 5aa141e..3d10405 100644 --- a/README.md +++ b/README.md @@ -36,6 +36,9 @@ We evaluated seven normalization approaches for all methods: 6. [Training Distribution Matching](https://peerj.com/articles/1621/) (TDM) 7. z-scoring (Z) +We also explored the use of [Seurat](https://satijalab.org/seurat/) to normalize array and RNA-seq data. +Due to low sample numbers at the edges of our titration protocol, many experimental conditions could not be integrated. + ## Requirements We recommend using the docker image `envest/rnaseq_titration_results:R-4.1.2` to handle package and dependency installation.