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Mention seurat
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envest committed Oct 31, 2022
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Expand Up @@ -36,6 +36,9 @@ We evaluated seven normalization approaches for all methods:
6. [Training Distribution Matching](https://peerj.com/articles/1621/) (TDM)
7. z-scoring (Z)

We also explored the use of [Seurat](https://satijalab.org/seurat/) to normalize array and RNA-seq data.
Due to low sample numbers at the edges of our titration protocol, many experimental conditions could not be integrated.

## Requirements

We recommend using the docker image `envest/rnaseq_titration_results:R-4.1.2` to handle package and dependency installation.
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