[python-package.yml] try to activate the conda base environment for p…

…y37 only
gph82 · Jan 3, 2025 · c7ac773 · c7ac773
1 parent 3de8cec
commit c7ac773
Showing 1 changed file with 33 additions and 5 deletions.
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -35,26 +35,54 @@ jobs:
       uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Conditionally set up Conda for Python 3.7
+      ### Python 3.7 block
+    - name: Conditionally set up conda for Python 3.7
       if: ${{ matrix.python-version == '3.7' }}
       uses: conda-incubator/setup-miniconda@v2
       with:
         auto-update-conda: true
-    - name: Install openmm via conda for only for python 3.7
+    - name: If Python is 3.7 install openmm via conda
       if: ${{ matrix.python-version == '3.7' }}
       run: conda install openmm -c conda-forge -y
       shell: bash
-    - name: Install dependencies
+    - name: If Python is 3.7 install dependencies in conda base environment
+      if: ${{ matrix.python-version == '3.7' }}
+      run: |
+        source activate base
+        python -m pip install --upgrade pip
+        pip install pytest pytest-cov pytest-xdist
+      shell: bash
+    - name: If Python is 3.7 install package in conda base environment
+      if: ${{ matrix.python-version == '3.7' }}
+      run: |
+        source activate base
+        pip install --upgrade pip
+        pip install --upgrade setuptools
+        pip install -e .
+        pip freeze
+      shell: bash
+    - name: If Python is 3.7 test with pytest and coverage Linux 8 threads in conda base environment
+      if: ${{ matrix.python-version == '3.7' }}
+      run: |
+        source activate base
+        echo -e '[run]\nomit = *dihedrals.py,*contact_matrix.py' > .coveragerc
+        pytest -n 8 -vs --cov=./ --cov-report=xml --disable-warnings --cov-config=.coveragerc
+      shell: bash
+      #### End Python 3.7 block
+    - name: If Python != 3.7 install dependencies normally
+      if: ${{ matrix.python-version != '3.7' }}
       run: |
         python -m pip install --upgrade pip
         pip install pytest pytest-cov pytest-xdist
-    - name: Install package
+    - name: If Python != 3.7 install package normaly
+      if: ${{ matrix.python-version != '3.7' }}
       run: |
         pip install --upgrade pip
         pip install --upgrade setuptools
         pip install -e .
         pip freeze
-    - name: Test with pytest and coverage Linux 8 threads
+    - name: If Python != 3.7 test with pytest and coverage Linux 8 threads normally
+      if: ${{ matrix.python-version != '3.7' }}
       run: |
         echo -e '[run]\nomit = *dihedrals.py,*contact_matrix.py' > .coveragerc
         pytest -n 8 -vs --cov=./ --cov-report=xml --disable-warnings --cov-config=.coveragerc