test

gongyh · Nov 1, 2024 · a959dc6 · a959dc6
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commit a959dc6
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Showing 11 changed files with 6 additions and 20 deletions.
diff --git a/combinations/hash.tsv b/combinations/hash.tsv
@@ -18,9 +18,7 @@ preseq=3.2.0,r-base=4.3.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
 kofamscan=1.3.0,python=3.6.10	quay.io/bioconda/base-glibc-busybox-bash:latest	0
 kraken2=2.1.2,krona=2.7.1,krakentools=1.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0
 canu=2.2,flye=2.9.2,perl-bioperl=1.7.8,perl-io-all=0.87	quay.io/bioconda/base-glibc-busybox-bash:latest	0
-numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16	quay.io/bioconda/base-glibc-busybox-bash:latest	0
+pypy=7.3.15,numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16	quay.io/bioconda/base-glibc-busybox-bash:latest	0
 fastx_toolkit=0.0.14,bbmap=39.01	quay.io/bioconda/base-glibc-debian-bash:latest	1
-python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
-python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5,perl-bioperl=1.7.8	quay.io/bioconda/base-glibc-debian-bash:latest	0
-python=3.12.3,biopython=1.84,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.1.10,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.26.4,scipy=1.14.1,numba=0.59.1,networkx=2.6.3,pandas=2.2.3,perl-bioperl=1.7.8	quay.io/bioconda/base-glibc-debian-bash:latest	0
+pypy=7.3.15,python=3.9.18,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
 pypy=7.3.15,python=3.9.18,biopython=1.84,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.26.4,scipy=1.12.0,networkx=2.6.3,pandas=2.2.2,perl-bioperl=1.7.8	quay.io/bioconda/base-glibc-debian-bash:latest	0
diff --git a/...2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:9e39042cffc540ecd850abf69c9c734fa7f93f35-0.tsv b/...2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:9e39042cffc540ecd850abf69c9c734fa7f93f35-0.tsv
diff --git a/...2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:f75504f23b69830fde44c8b392512eaec51976d1-0.tsv b/...2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:f75504f23b69830fde44c8b392512eaec51976d1-0.tsv
diff --git a/...2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0.tsv b/...2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0.tsv
diff --git a/...2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-0.tsv b/...2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-0.tsv
diff --git a/...2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:34fb1060499c2c2fc71354290282dcd6cba7a68b-0.tsv b/...2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:34fb1060499c2c2fc71354290282dcd6cba7a68b-0.tsv
diff --git a/...2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:c32998af85c0bad16098c2058913b09d9e367237-0.tsv b/...2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:c32998af85c0bad16098c2058913b09d9e367237-0.tsv
diff --git a/...2-5d5eeb8cf72d7f9d37db3f2f2487f5784a7fcc52:692225a4df612dc62b65ebb1556a185a099b95b0-0.tsv b/...2-5d5eeb8cf72d7f9d37db3f2f2487f5784a7fcc52:692225a4df612dc62b65ebb1556a185a099b95b0-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pypy=7.3.15,python=3.9.18,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-b7b08ecbb8cbfa2e328c1c68384966d9ba24b2c8:f336290386637d8bab291cadf8856d6476118c4c-0.tsv b/...2-b7b08ecbb8cbfa2e328c1c68384966d9ba24b2c8:f336290386637d8bab291cadf8856d6476118c4c-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pypy=7.3.15,numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-b85de0f0888e1a8481d8c5d0c3b52736036932cc:96c1f81ca967332ad179c5bc0a350133f6bdf2a8-0.tsv b/...2-b85de0f0888e1a8481d8c5d0c3b52736036932cc:96c1f81ca967332ad179c5bc0a350133f6bdf2a8-0.tsv
diff --git a/...2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0.tsv b/...2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0.tsv
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		@@ -0,0 +1,2 @@
		#targets base_image image_build
		pypy=7.3.15,python=3.9.18,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1 quay.io/bioconda/base-glibc-busybox-bash:latest 0
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#targets base_image image_build
		pypy=7.3.15,numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16 quay.io/bioconda/base-glibc-busybox-bash:latest 0