update

gongyh · Nov 1, 2024 · 7f57fe7 · 7f57fe7
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commit 7f57fe7
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/README.md b/README.md
@@ -28,3 +28,4 @@ Multi-package containers for nf-core-scgs pipeline
 | MGPGTOOLS | python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1 | mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee | quay.io/scgs/mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0 | https://depot.galaxyproject.org/singularity/mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0 |
 | PASA | python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5,perl-bioperl=1.7.8 | mulled-v2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:34fb1060499c2c2fc71354290282dcd6cba7a68b | quay.io/scgs/mulled-v2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:34fb1060499c2c2fc71354290282dcd6cba7a68b-0 | https://depot.galaxyproject.org/singularity/mulled-v2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:34fb1060499c2c2fc71354290282dcd6cba7a68b-0 |
 | PASA2 | python=3.12.3,biopython=1.84,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.1.10,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.26.4,scipy=1.14.1,numba=0.59.1,networkx=2.6.3,pandas=2.2.3,perl-bioperl=1.7.8 | mulled-v2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:c32998af85c0bad16098c2058913b09d9e367237 | quay.io/scgs/mulled-v2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:c32998af85c0bad16098c2058913b09d9e367237-0 | https://depot.galaxyproject.org/singularity/mulled-v2-13e4a6d8b6a43c8cebffef2d3a782f9859e04bd8:c32998af85c0bad16098c2058913b09d9e367237-0 |
+| PASA_pypy | pypy=7.3.15,python=3.9.18,biopython=1.84,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.26.4,scipy=1.12.0,networkx=3.2.1,pandas=2.2.2,perl-bioperl=1.7.8 | mulled-v2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:f75504f23b69830fde44c8b392512eaec51976d1 | quay.io/scgs/mulled-v2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:f75504f23b69830fde44c8b392512eaec51976d1-0 | https://depot.galaxyproject.org/singularity/mulled-v2-073b771ca2dadccea705dbf1ddd01a7cf8acbd16:f75504f23b69830fde44c8b392512eaec51976d1-0 |