From 794b634f7409ff2924a20a6da1a8a59c47b3800c Mon Sep 17 00:00:00 2001 From: gongyh Date: Fri, 25 Oct 2024 10:30:39 +0800 Subject: [PATCH] fix --- README.md | 2 +- combinations/hash.tsv | 2 +- ...0e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0.tsv | 2 ++ 3 files changed, 4 insertions(+), 2 deletions(-) create mode 100644 pull/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0.tsv diff --git a/README.md b/README.md index e240152..43ed1ed 100644 --- a/README.md +++ b/README.md @@ -26,4 +26,4 @@ Multi-package containers for nf-core-scgs pipeline | DOUBLETD | numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16 | mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614 | quay.io/scgs/mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0 | https://depot.galaxyproject.org/singularity/mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0 | | BBNORM | fastx_toolkit=0.0.14,bbmap=39.01 | mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56 | quay.io/scgs/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-1 | https://depot.galaxyproject.org/singularity/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-1 | | MGPGTOOLS | python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1 | mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee | quay.io/scgs/mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0 | https://depot.galaxyproject.org/singularity/mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0 | -| PASA | python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.490,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 | mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:bc3c7fc37d89a946ddaef93cc254066f41b63bbb | quay.io/scgs/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:bc3c7fc37d89a946ddaef93cc254066f41b63bbb-0 | https://depot.galaxyproject.org/singularity/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:bc3c7fc37d89a946ddaef93cc254066f41b63bbb-0 | +| PASA | python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 | mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19 | quay.io/scgs/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0 | https://depot.galaxyproject.org/singularity/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0 | diff --git a/combinations/hash.tsv b/combinations/hash.tsv index fea8dc2..591814e 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -21,4 +21,4 @@ canu=2.2,flye=2.9.2,perl-bioperl=1.7.8,perl-io-all=0.87 quay.io/bioconda/base-gl numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16 quay.io/bioconda/base-glibc-busybox-bash:latest 0 fastx_toolkit=0.0.14,bbmap=39.01 quay.io/bioconda/base-glibc-debian-bash:latest 1 python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1 quay.io/bioconda/base-glibc-busybox-bash:latest 0 -python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.490,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 quay.io/bioconda/base-glibc-debian-bash:latest 0 +python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 quay.io/bioconda/base-glibc-debian-bash:latest 0 diff --git a/pull/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0.tsv b/pull/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0.tsv new file mode 100644 index 0000000..b00214f --- /dev/null +++ b/pull/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0.tsv @@ -0,0 +1,2 @@ +#targets base_image image_build +python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 quay.io/bioconda/base-glibc-debian-bash:latest 0