fix

README.md

@@ -26,4 +26,4 @@ Multi-package containers for nf-core-scgs pipeline
 | DOUBLETD | numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16 | mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614 | quay.io/scgs/mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0 | https://depot.galaxyproject.org/singularity/mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0 |
 | BBNORM | fastx_toolkit=0.0.14,bbmap=39.01 | mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56 | quay.io/scgs/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-1 | https://depot.galaxyproject.org/singularity/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-1 |
 | MGPGTOOLS | python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1 | mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee | quay.io/scgs/mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0 | https://depot.galaxyproject.org/singularity/mulled-v2-089d7a065ba2c540b6ac7fe9ae1819e5e40ec7b4:23979f6d41a67b9e859697c2a8a32a23894041ee-0 |
-| PASA | python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.490,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 | mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:bc3c7fc37d89a946ddaef93cc254066f41b63bbb | quay.io/scgs/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:bc3c7fc37d89a946ddaef93cc254066f41b63bbb-0 | https://depot.galaxyproject.org/singularity/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:bc3c7fc37d89a946ddaef93cc254066f41b63bbb-0 |
+| PASA | python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5 | mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19 | quay.io/scgs/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0 | https://depot.galaxyproject.org/singularity/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0 |

combinations/hash.tsv

@@ -21,4 +21,4 @@ canu=2.2,flye=2.9.2,perl-bioperl=1.7.8,perl-io-all=0.87	quay.io/bioconda/base-gl
 numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16	quay.io/bioconda/base-glibc-busybox-bash:latest	0
 fastx_toolkit=0.0.14,bbmap=39.01	quay.io/bioconda/base-glibc-debian-bash:latest	1
 python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0,mummer4=4.0.0rc1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
-python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.490,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5	quay.io/bioconda/base-glibc-debian-bash:latest	0
+python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5	quay.io/bioconda/base-glibc-debian-bash:latest	0

pull/mulled-v2-adf032e06d3ecc4986e4c4efa160e481707acd5a:5d5dd40d2a8d9df574dfc603ccb059d9d3354e19-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+python=3.7.10,biopython=1.79,bedtools=2.30.0,prodigal=2.6.3,cd-hit=4.8.1,blast=2.13.0,hmmer=3.3.2,diamond=2.0.14,mcl=14.137,mafft=7.526,parallel=20220222,numpy=1.21.6,scipy=1.7.3,numba=0.56.3,networkx=2.6.3,pandas=1.3.5	quay.io/bioconda/base-glibc-debian-bash:latest	0