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MGPGtools
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@Zhousq0824
Zhousq0824 committed Apr 7, 2024
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3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -24,4 +24,5 @@ Multi-package containers for nf-core-scgs pipeline
| KRAKEN | kraken2=2.1.2,krona=2.7.1,krakentools=1.2 | mulled-v2-3bbb1b9ff2130265cf8d9498a097b04978fb988f:6688dcb6662e35001e709b425821fff321f15540 | quay.io/scgs/mulled-v2-3bbb1b9ff2130265cf8d9498a097b04978fb988f:6688dcb6662e35001e709b425821fff321f15540-0 | https://depot.galaxyproject.org/singularity/mulled-v2-3bbb1b9ff2130265cf8d9498a097b04978fb988f:6688dcb6662e35001e709b425821fff321f15540-0 |
| CANU | canu=2.2,flye=2.9.2,perl-bioperl=1.7.8,perl-io-all=0.87 | mulled-v2-ef18b85941472064953d94d6112dc05e36194472:90a061fb09200847c4637e3480aa75a467fb2786 | quay.io/scgs/mulled-v2-ef18b85941472064953d94d6112dc05e36194472:90a061fb09200847c4637e3480aa75a467fb2786-0 | https://depot.galaxyproject.org/singularity/mulled-v2-ef18b85941472064953d94d6112dc05e36194472:90a061fb09200847c4637e3480aa75a467fb2786-0 |
| DOUBLETD | numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16 | mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614 | quay.io/scgs/mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0 | https://depot.galaxyproject.org/singularity/mulled-v2-cabd179211b935b76ccbd0bcec69e95eab67a374:aff7fa7836f60ba389a388528d6cfaf626926614-0 |
| BBNORM | fastx_toolkit=0.0.14,bbmap=39.01 | mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56 | quay.io/scgs/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56 | https://depot.galaxyproject.org/singularity/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56 |
| BBNORM | fastx_toolkit=0.0.14,bbmap=39.01 | mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56 | quay.io/scgs/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-0 | https://depot.galaxyproject.org/singularity/mulled-v2-0f45a2e9949b9309cc37635f57bff7a66baf8095:86172d512030702a6bdb7b2cd7e301c3e1a14e56-0 |
| MGPGTOOLS | python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0 | mulled-v2-8614ea8a0c590008c2081dbe0c6e126c5aff15d7:9249ce7d6446676d285ddf2e4a704ff236b9f9ce | quay.io/scgs/mulled-v2-8614ea8a0c590008c2081dbe0c6e126c5aff15d7:9249ce7d6446676d285ddf2e4a704ff236b9f9ce-0 | https://depot.galaxyproject.org/singularity/mulled-v2-8614ea8a0c590008c2081dbe0c6e126c5aff15d7:9249ce7d6446676d285ddf2e4a704ff236b9f9ce-0 |
1 change: 1 addition & 0 deletions combinations/hash.tsv
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Expand Up @@ -20,3 +20,4 @@ kraken2=2.1.2,krona=2.7.1,krakentools=1.2 quay.io/bioconda/base-glibc-busybox-ba
canu=2.2,flye=2.9.2,perl-bioperl=1.7.8,perl-io-all=0.87 quay.io/bioconda/base-glibc-busybox-bash:latest 0
numpy=1.25.0,scipy=1.10.1,pysam=0.21.0,pandas=2.0.2,pyvcf=0.6.8,python=3.9.16 quay.io/bioconda/base-glibc-busybox-bash:latest 0
fastx_toolkit=0.0.14,bbmap=39.01 quay.io/bioconda/base-glibc-busybox-bash:latest 0
python=3.10.14,odgi=0.8.4,seqkit=2.8.0,gfapy=1.2.3,clustalw=2.1,gffread=0.12.7,aster=1.16,biopython=1.83,toytree=3.0.1,pandas=2.2.1,numpy=1.26.4,prettytable=3.10.0 quay.io/bioconda/base-glibc-busybox-bash:latest 0

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