0.3.1

Features

• n/a

Improvements

• present authorship after name parsing (#112) thanks to @jtmiller28

Bug fixes

• avoid illegal access by using explicit serializers and disabling mapdb workaround (#44) thanks to @jtmiller28

0.3.0

Features

• n/a

Improvements

• revert workaround after @marcos-lg fixed gbif/gbif-api#95 thanks to @mdoering @marcos-lg
• enable use of relative path for property files #110 thanks to @jtmiller28
• include authorship (if available) when matching names #104 thanks to @jtmiller28
• use commonly used ${java.home}/.cache/nomer as default cache dir, instead of ./.nomer #111

Bug fixes

n/a

0.2.15

Features

• n/a

Improvements

• n/a

Bug fixes

• workaround implemented for interpreting language codes provided by GBIF's api - gbif/gbif-api#95
• ensure that nomer ls wfo completes successfully (see #101)

0.2.14

Features

• add support for name alignment with World of Flora Online as suggested by JT and @seltmann (see https://github.com/globalbioticinteractions/issues/96 )
• add support for ORCID matcher 76d4919
• add support for name alignment with https://batnames.org jhpoelen/hmw#4 #90 @ajacsherman

Improvements

• upgrade to use Salim, JA. (2022). A Repackaged Taxonomic Backbone of Global Biodiversity Information Facility (GBIF) - 2021-11-26 (0.1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6707049 @zedomel

Bug fixes

n/a

0.2.13

Features

n/a

Improvements

n/a

Bug fixes

• re-introduce -include-header option that got accidentally dropped in v0.2.12 (related to #79)

0.2.12

Features

• introducing adoc and man page support for Nomer, after installing sudo nomer install-manpage, you can type man nomer to produce:

NOMER(1)                                         Nomer Manual                                        NOMER(1)

NAME
      nomer - maps identifiers and names to other identifiers and names

SYNOPSIS
      nomer [-hV] [COMMAND]

DESCRIPTION
      maps identifiers and names to other identifiers and names

OPTIONS
      -h, --help
          Show this help message and exit.

      -V, --version
          Print version information and exit.

COMMANDS
      version
          Show Version

      replace

Improvements

• update globi taxon graph to v0.3.36; related to globalbioticinteractions/globalbioticinteractions#757
• update discoverlife pages
• use picocli as command-line library 7798f89

Bug fixes

n/a

0.2.11

Features

• introducing gbif-parser in addition to gn-parser
• introducing matching to Open Tree of Life Taxonomy by id (#30)

Improvements

• ignore self-referential discoverlife names #72 GlobalNamesArchitecture/dwca_hunter#53
• remove name parser from [globi-correct] matcher
• refactor offline taxonomic matchers to not cache denormalized taxa
• update Nomer Corpus of Taxonomic Resources; hash://sha256/b7da22af4d2…
• upgrade discoverlife beenames

Bug fixes

• fix nomer preston hash

0.2.10

Features

• add initial support for offline matching against Catalogue of Life taxonomy #47

Improvements

• remove dependency on log4j
• upgrade to globi-libs v0.23.4
• add nomer clean in install procedure as suggested by @seltmann
• update Nomer taxonomic corpus to hash://sha256/df5b1b63af4c6e995eddfe6bf36b4ece5475574fd4e871ad1ec0a8b283091e08 ; see also https://zenodo.org/record/6030038 https://doi.org/10.5281/zenodo.6030038

Bug fixes

• use https endpoint for WoRMS at https://marinespecies.org .

0.2.9

Features

n/a

Improvements

• introduce option to include table header (#54)
• upgrade to globi-libs v0.23.2
• upgrade to globi taxon graph v0.3.35
• only report HOMONYM_OF relation for homonyms, not accepted/synonym (#63)

Bug fixes

• prevent crash of plazi treatments matcher (#66)

0.2.8

Features

• introduce support for name authorship in input/output schemas (related to #58)

Improvements

• expose taxon ranks (e.g., species, subspecies, variety) for related discoverlife names (see #57 and #58)

Bug fixes

n/a