0.5.8

Features

• n/a

Improvements

• upgrade to globi-libs v0.25.18 related to globalbioticinteractions/name-alignment-template#18 as suggested by @whitfarnum
• update taxon resource indexes to include authorship of higher order taxa
• add support for including columns containing authorship of specific taxonomic ranks using "dot" notation:

To specify output schema with authorship of specific rank (e.g., kingdom), you can say:

nomer.append.schema.output=[{"column":0,"type":"path.kingdom.id"},{"column": 1,"type":"path.kingdom.name"},{"column": 2,"type":"path.kingdom.authorship"}]

and run

echo -e "\tEnhydra lutris"\
 | nomer append --properties my.properties --include-header pbdb\
 | mlr --itsvlite --oxtab cat

to produce:

providedExternalId              
providedName                    Enhydra lutris
relationName                    HAS_ACCEPTED_NAME
resolvedPath.kingdom.id         PBDB:1
resolvedPath.kingdom.name       Eukaryota
resolvedPath.kingdom.authorship É. Chatton 1925

Bug Fixes

• n/a