From 1521903b0fd7246fc1d71fd2e6ad8901f8e956e0 Mon Sep 17 00:00:00 2001
From: AmstlerStephan <stephan.amstler@student.uibk.ac.at>
Date: Mon, 17 Jun 2024 17:00:55 +0200
Subject: [PATCH] Add CI tests for nf-test

---
 .github/workflows/ci-tests.yml | 48 ++++++++++++++++++++++++++++++++++
 1 file changed, 48 insertions(+)
 create mode 100644 .github/workflows/ci-tests.yml

diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml
new file mode 100644
index 0000000..9643375
--- /dev/null
+++ b/.github/workflows/ci-tests.yml
@@ -0,0 +1,48 @@
+name: CI Tests
+
+on: [push, pull_request]
+
+jobs:
+
+  test:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        shard: [1, 2, 3, 4, 5]
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Set up JDK 11
+        uses: actions/setup-java@v2
+        with:
+          java-version: '11'
+          distribution: 'adopt'
+
+      - name: Setup Nextflow
+        uses: nf-core/setup-nextflow@v1
+        with:
+          version: "latest-edge"
+
+      - name: Install nf-test
+        run: |
+          wget -qO- get.nf-test.com | bash  -s 0.9.0-rc2
+          sudo mv nf-test /usr/local/bin/
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Build Docker
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          push: false
+          load: true
+          tags: "genepi/umi-pipeline-nf"
+          cache-from: type=gha          
+          cache-to: type=gha,mode=max
+
+      - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }})
+        run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }}
\ No newline at end of file