test using existing release container

genepi · Jun 18, 2024 · 09ab258 · 09ab258
1 parent b60ab80
commit 09ab258
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Showing 2 changed files with 2 additions and 12 deletions.
diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml
@@ -34,16 +34,6 @@ jobs:
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v3
 
-      - name: Build Docker
-        uses: docker/build-push-action@v5
-        with:
-          context: ./env
-          file: ./env/Dockerfile
-          push: false
-          load: true
-          tags: "genepi/umi-pipeline-nf"
-          cache-from: type=gha          
-          cache-to: type=gha,mode=max
 
       - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }})
-        run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }}
+        run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }} --container quay.io/genepi/umi-pipeline-nf:v0.2.1
diff --git a/env/environment.yml b/env/environment.yml
@@ -6,7 +6,7 @@ channels:
 dependencies:
   - python>=3.8
   - medaka>=1.8.0
-  - minimap2=2.24-r1122
+  - minimap2=2.24
   - samtools=1.15.1
   - seqtk=1.3
   - lofreq=2.1.5