Update counters

genepi · Jul 24, 2024 · 3da72dd · 3da72dd
1 parent a084bac
commit 3da72dd
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/src/main/java/genepi/imputationserver/steps/InputValidationCommand.java b/src/main/java/genepi/imputationserver/steps/InputValidationCommand.java
@@ -265,11 +265,9 @@ private boolean checkVcfFiles() throws Exception {
 		// init counters
 		output.print("");
 		output.setCounter("samples", noSamples);
-		output.setCounter("genotypes", noSamples * noSnps);
+		output.setCounter("variants",  noSnps);
 		output.setCounter("chromosomes", noSamples * chromosomes.size());
 		output.setCounter("runs", 1);
-		output.setCounter("refpanel_" + panel.getId(), 1);
-		output.setCounter("phasing_" + "eagle", 1); //phasing?
 		return true;
 
 	}