diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 9b94b95..1e02aec 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -40,7 +40,7 @@ jobs: - name: Test with pytest run: | - pytest --cov --cov-report=xml --continue-on-collection-errors -n 4 + pytest --cov --cov-report=xml --continue-on-collection-errors - name: Upload coverage reports to Codecov uses: codecov/codecov-action@v4 diff --git a/tests/test_cls.py b/tests/test_cls.py index d7c888c..c57c41a 100644 --- a/tests/test_cls.py +++ b/tests/test_cls.py @@ -7,8 +7,8 @@ def get_adata() -> sc.AnnData: adata = sc.datasets.visium_sge("V1_Breast_Cancer_Block_A_Section_1") - # random sample 500 cells - # adata = adata[np.random.choice(adata.obs.index, 500), :].copy() + # sample first 500 cells + adata = adata[:500, :] adata.layers["counts"] = adata.X.copy() adata.obs["cell_type"] = np.random.choice(["a", "b", "c"], adata.n_obs).tolist() adata.obs_names_make_unique() @@ -18,8 +18,8 @@ def get_adata() -> sc.AnnData: def get_adata_2() -> sc.AnnData: adata = sc.datasets.visium_sge("V1_Breast_Cancer_Block_A_Section_2") - # random sample 600 cells - # adata = adata[np.random.choice(adata.obs.index, 600), :].copy() + # sample first 600 cells + adata = adata[:600, :] adata.layers["counts"] = adata.X.copy() adata.obs["cell_type"] = np.random.choice(["a", "b", "c"], adata.n_obs).tolist() adata.obs_names_make_unique()