IDI - INCOHERENT DIFFRACTION IMAGING 🐉

Singularity Image now at library://fzimmermann89/idi/idi

Conda Pacakges at zimmf/idi

PIP Source and Wheels at idi

Wheels at Releases

content of the repo

• ipynb: example notebooks
• simulation: simulation of incoherent images
• reconstruction: direct and ft based reconstruction
• util: some small utilities for data analysis, geometry and random distributions, etc.

installation

• for gpu support you need to install a cupy version matching your cuda version
• afterwards, pip install 'git+https://github.com/fzimmermann89/idi' to get the latest version

preparation for slac sdf

Use Singulariy, if using OOD launcher, use the following to start a jupyterhub

    function jupyter() { singularity run --app jupyter --nv -B /sdf,/gpfs,/scratch,/lscratch library://fzimmermann89/idi/idi $@; }

preparation for sacla

• Download and install miniconda, setup ssh tunnel for web access.
• conda create -n local3 python=3.7 numpy mkl mkl-dev ipython ipykernel cython jinja2 numba numexpr matplotlib six scipy jupyterlab
• conda activate local3
• pip install https://github.com/fzimmermann89/idi/
• python -m ipykernel install --user --name local-simulation-env3 --display-name "local simulation(py37)"

(C) Felix Zimmermann