updated comments and license

LICENSE

@@ -186,7 +186,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright {yyyy} {name of copyright owner}
+   Copyright {2016} {hogehoge}
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

build.sh

@@ -1,2 +1,17 @@
+#*******************************************************************************
+# Copyright 2016 Kaito Ii
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#*******************************************************************************
 #!/bin/sh
 xjc -J-Duser.language=en -d src schema/CellDesigner.xsd schema/sbml-level-2-v4-wo-annotation.xsd schema/sbml-mathml.xsd schema/sbmlCellDesignerExtension_v4_2.xsd

src/org/sbml/_2001/ns/celldesigner/AntisenseRNA.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -14,6 +29,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * For antisense RNA.
  * 
@@ -62,12 +78,21 @@
 })
 public class AntisenseRNA {
 
+    /** The notes. */
     protected Notes notes;
+
+    /** The list of regions. */
     protected ListOfRegions listOfRegions;
+
+    /** The id. */
     @XmlAttribute(name = "id", required = true)
     protected String id;
+
+    /** The name. */
     @XmlAttribute(name = "name", required = true)
     protected String name;
+
+    /** The type. */
     @XmlAttribute(name = "type", required = true)
     protected String type;
 

src/org/sbml/_2001/ns/celldesigner/BaseProduct.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -14,6 +29,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * Base product.
  * 
@@ -48,9 +64,14 @@
 })
 public class BaseProduct {
 
+    /** The link anchor. */
     protected LinkAnchor linkAnchor;
+
+    /** The alias. */
     @XmlAttribute(name = "alias", required = true)
     protected String alias;
+
+    /** The species. */
     @XmlAttribute(name = "species", required = true)
     protected String species;
 

src/org/sbml/_2001/ns/celldesigner/BaseProducts.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -17,6 +32,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * List of base products.
  * 
@@ -44,6 +60,7 @@
 })
 public class BaseProducts {
 
+    /** The base product. */
     @XmlElement(required = true)
     protected List<BaseProduct> baseProduct;
 
@@ -66,8 +83,8 @@ public class BaseProducts {
      * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link BaseProduct }
-     * 
-     * 
+     *
+     * @return the base product
      */
     public List<BaseProduct> getBaseProduct() {
         if (baseProduct == null) {

src/org/sbml/_2001/ns/celldesigner/BaseReactant.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -14,6 +29,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * Base reactant.
  * 
@@ -48,9 +64,14 @@
 })
 public class BaseReactant {
 
+    /** The link anchor. */
     protected LinkAnchor linkAnchor;
+
+    /** The alias. */
     @XmlAttribute(name = "alias", required = true)
     protected String alias;
+
+    /** The species. */
     @XmlAttribute(name = "species", required = true)
     protected String species;
 

src/org/sbml/_2001/ns/celldesigner/BaseReactants.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -17,6 +32,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * List of base reactants.
  * 
@@ -44,6 +60,7 @@
 })
 public class BaseReactants {
 
+    /** The base reactant. */
     @XmlElement(required = true)
     protected List<BaseReactant> baseReactant;
 
@@ -66,8 +83,8 @@ public class BaseReactants {
      * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link BaseReactant }
-     * 
-     * 
+     *
+     * @return the base reactant
      */
     public List<BaseReactant> getBaseReactant() {
         if (baseReactant == null) {

src/org/sbml/_2001/ns/celldesigner/BindingRegion.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -16,6 +31,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * <p>Java class for bindingRegion complex type.
  * 
@@ -40,12 +56,19 @@
 @XmlType(name = "bindingRegion")
 public class BindingRegion {
 
+    /** The angle. */
     @XmlAttribute(name = "angle")
     protected BigDecimal angle;
+
+    /** The id. */
     @XmlAttribute(name = "id")
     protected String id;
+
+    /** The name. */
     @XmlAttribute(name = "name")
     protected String name;
+
+    /** The size. */
     @XmlAttribute(name = "size")
     protected BigDecimal size;
 

src/org/sbml/_2001/ns/celldesigner/BindingSiteInBlockDiagram.java

@@ -1,3 +1,18 @@
+/*******************************************************************************
+ * Copyright 2016 Kaito Ii
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *******************************************************************************/
 //
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
@@ -16,6 +31,7 @@
 import javax.xml.bind.annotation.XmlType;
 
 
+// TODO: Auto-generated Javadoc
 /**
  * Binding site on the left side of a block(protein).
  * 
@@ -80,30 +96,43 @@
 @XmlType(name = "bindingSiteInBlockDiagram")
 public class BindingSiteInBlockDiagram {
 
+    /** The id. */
     @XmlAttribute(name = "id", required = true)
     protected short id;
+
+    /** The offset Y. */
     @XmlAttribute(name = "offsetY", required = true)
     protected BigDecimal offsetY;
+
+    /** The name. */
     @XmlAttribute(name = "name", required = true)
     protected String name;
+
+    /** The name offset X. */
     @XmlAttribute(name = "nameOffsetX", required = true)
     protected BigDecimal nameOffsetX;
+
+    /** The name offset Y. */
     @XmlAttribute(name = "nameOffsetY", required = true)
     protected BigDecimal nameOffsetY;
+
+    /** The protein. */
     @XmlAttribute(name = "protein", required = true)
     protected String protein;
 
     /**
      * Gets the value of the id property.
-     * 
+     *
+     * @return the id
      */
     public short getId() {
         return id;
     }
 
     /**
      * Sets the value of the id property.
-     * 
+     *
+     * @param value the new id
      */
     public void setId(short value) {
         this.id = value;