From c405fb0b7e10972fb7aefba37a9345443f81a697 Mon Sep 17 00:00:00 2001
From: Felipe Almeida <felipemarques89@gmail.com>
Date: Wed, 11 Sep 2024 13:14:38 -0300
Subject: [PATCH] add sourmash out channel handling

---
 workflows/bacannot.nf | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/workflows/bacannot.nf b/workflows/bacannot.nf
index 88eb4cf..f86ce6c 100644
--- a/workflows/bacannot.nf
+++ b/workflows/bacannot.nf
@@ -287,6 +287,10 @@ workflow BACANNOT {
           params.sourmash_scale,
           params.sourmash_kmer
         )
+
+        ch_sourmash_plot = SOURMASH_ALL.out.plot.first()
+      } else {
+        ch_sourmash_plot = []
       }
 
       //
@@ -419,7 +423,7 @@ workflow BACANNOT {
           .join( phast_output_ch,                 remainder: true )
           .join( MERGE_ANNOTATIONS.out.digis_gff                  )
           .join( ch_integron_finder_gff,          remainder: true ),
-        SOURMASH_ALL.out.plot.first() // make value channel
+        ch_sourmash_plot
       )
 
       //