From 80d34abbc70e833e347a15de210ab7d42f97f516 Mon Sep 17 00:00:00 2001 From: Felipe Marques de Almeida Date: Sat, 9 Mar 2024 12:20:30 +0000 Subject: [PATCH] it fails to publish, lets resume --- .github/workflows/test_pr_docker.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test_pr_docker.yml b/.github/workflows/test_pr_docker.yml index 6eb23f9..24f9f90 100644 --- a/.github/workflows/test_pr_docker.yml +++ b/.github/workflows/test_pr_docker.yml @@ -28,13 +28,15 @@ jobs: - name: Get database run: | - nextflow run main.nf -profile docker --get_zenodo_db --output ./zenodo_db --max_memory '6.GB' --max_cpus 2 + nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 + nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 -resume + nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 -resume sudo rm -r work .nextflow* yes | docker system prune - name: Run quicktest profile run: | - nextflow run main.nf -profile docker,quicktest --bacannot_db $( realpath ./zenodo_db/bac* ) --output ./results --max_memory '6.GB' --max_cpus 2 + nextflow run main.nf -profile docker,quicktest --bacannot_db $( realpath ./bac* ) --output ./results --max_memory '6.GB' --max_cpus 2 sudo rm -r work .nextflow* yes | docker system prune