diff --git a/.github/workflows/test_pr_docker.yml b/.github/workflows/test_pr_docker.yml index 6eb23f9..24f9f90 100644 --- a/.github/workflows/test_pr_docker.yml +++ b/.github/workflows/test_pr_docker.yml @@ -28,13 +28,15 @@ jobs: - name: Get database run: | - nextflow run main.nf -profile docker --get_zenodo_db --output ./zenodo_db --max_memory '6.GB' --max_cpus 2 + nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 + nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 -resume + nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 -resume sudo rm -r work .nextflow* yes | docker system prune - name: Run quicktest profile run: | - nextflow run main.nf -profile docker,quicktest --bacannot_db $( realpath ./zenodo_db/bac* ) --output ./results --max_memory '6.GB' --max_cpus 2 + nextflow run main.nf -profile docker,quicktest --bacannot_db $( realpath ./bac* ) --output ./results --max_memory '6.GB' --max_cpus 2 sudo rm -r work .nextflow* yes | docker system prune