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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 650 375

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 329 84

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 315 83

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 255 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 149 93

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 119 21

Repositories

Showing 10 of 191 repositories
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 53 Apache-2.0 9 24 1 Updated Mar 27, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,405 0 8 Updated Mar 26, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 650 GPL-2.0 375 87 (1 issue needs help) 12 Updated Mar 26, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 46 MIT 4 1 4 Updated Mar 26, 2025
  • OpenMM_FI_2025 Public
    flatironinstitute/OpenMM_FI_2025’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 26, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 93 MIT 9 111 (1 issue needs help) 6 Updated Mar 25, 2025
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 1 0 0 Updated Mar 25, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 42 Apache-2.0 1 11 1 Updated Mar 25, 2025
  • nbfiddle Public
    flatironinstitute/nbfiddle’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 0 Updated Mar 24, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 329 84 45 (3 issues need help) 9 Updated Mar 22, 2025
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