install_list.txt

## PROTOBUF ##

wget https://github.com/google/protobuf/releases/download/v2.5.0/protobuf-2.5.0.tar.gz
#unzip protobuf
cd protobuf-2.5.0/
#wget https://raw.githubusercontent.com/google/protobuf/master/src/google/protobuf/stubs/atomicops_internals_generic_gcc.h -P src/google/protobuf/stubs/ 
./configure
make
make check
sudo make install
export LD_LIBRARY_PATH=/usr/local/lib
protoc --version


## APT-GET ##

sudo apt-get install --no-install-recommends libboost-all-dev
sudo apt-get install libgflags-dev libgoogle-glog-dev libhdf5-serial-dev libhdf5-dev \
	libopenblas-dev python-opencv libopencv-dev libleveldb-dev libgflags-dev libgoogle-glog-dev \
	liblmdb-dev libsnappy-dev libatlas-base-dev cmake libpng-dev libopenexr-dev libjasper-dev \
	libprotobuf-dev protobuf-compiler python-protobuf doxygen python-dev python-pip libhdf5-serial-dev 

cd /usr/lib/x86_64-linux-gnu
sudo ln -sf libhdf5_serial.so libhdf5.so
sudo ln -sf libhdf5_serial_hl.so libhdf5_hl.so

#sudo apt-get install libtiff-tools

## LIBTIFF4 ##

wget http://old-releases.ubuntu.com/ubuntu/pool/universe/t/tiff3/libtiff4_3.9.7-2ubuntu1_amd64.deb
sudo dpkg -i libtiff4_3.9.7-2ubuntu1_amd64.deb


## CONDA ##

#substituir pela versão adequada
conda env create -f hed16.yml
source activate hed16


## OPENCV + LIBTIFF4 ## 

sudo apt-get install libgles2-mesa-dev qtbase5-dev

wget https://github.com/opencv/opencv/archive/3.4.2.zip
unzip 3.4.2.zip
rm 3.4.2.zip
mv opencv-3.4.2 OpenCV
cd OpenCV
mkdir build
cd build

cmake \
-DWITH_QT=ON \
-DWITH_OPENGL=ON \
-DFORCE_VTK=ON \
-DWITH_TBB=ON \
-DWITH_GDAL=ON \
-DWITH_XINE=ON \
-DBUILD_EXAMPLES=ON \
-DENABLE_PRECOMPILED_HEADERS=OFF \
-DBUILD_TIFF=ON \
-DWITH_1394=OFF \
-DENABLE_SSSE3=ON \
-DENABLE_AVX=ON \
-DWITH_CUBLAS=OFF \
-DWITH_CUDA=OFF \
-DWITH_CUFFT=OFF \
-DWITH_FFMPEG=ON \
-DWITH_TBB=ON \
-DWITH_OPENMP=ON \
-DWITH_IPP=ON \
../

make -j4
sudo make install
sudo ldconfig -v
locate libopencv_core.so.3.4
#cd locate
sudo ldconfig -v

sudo cp /usr/lib/x86_64-linux-gnu/libICE.so.6 /usr/lib/x86_64-linux-gnu/libICE.so
sudo cp /usr/lib/x86_64-linux-gnu/libSM.so.6 /usr/lib/x86_64-linux-gnu/libSM.so


## CAFFE ## 

mkdir build
cd build
cmake ..
cd ..
make all
make pycaffe
make test
make runtest


## ~/.BASHRC ##

#adicionar ao ~/.bashrc
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:usr/local/lib:~/anaconda2/lib:/home/falreis/Me/hed/python/caffe/
export C_INCLUDE_PATH=/usr/include/python2.7


## CONDA ##

conda install -c defaults protobuf libprotobuf