conv_dotM=1e-6.py

# -*- coding: utf-8 -*-
"""
"""

import gzip

import numpy as np
np.set_printoptions(formatter={'float_kind': (lambda x: "%.4e" % x)})
from numpy import pi, sqrt

import h5py

import numba
from numba import jit, njit, int64, float64
from numba.experimental import jitclass

import cologne
from cologne import const
from cologne import opac_vp17 as opac
from cologne import inicond
from cologne import rttb
from cologne import hydrostat
from cologne import extheat
from cologne import conv



@jitclass
class Model:
    ##
    ## Parameters of the model

    M_star:    float64
    R_star:    float64
    T_star:    float64
    dotM:      float64
    T_isr:     float64

    R:         float64
    Omega:     float64

    mu_mol:    float64
    gamma:     float64
    C_p:       float64
    C_v:       float64

    sigma_max: float64
    rho_ext:   float64

    ##
    ## Parameters of the run

    fpath: str
    fbase: str

    n_nod: int64

    t_fin: float64
    t_ss:  float64[:]

    ##
    ## Fields

    sigma:   float64[:]
    z:       float64[:]
    rho:     float64[:]
    T:       float64[:]
    E:       float64[:]
    F_rad:   float64[:]
    F_conv:  float64[:]
    effconv: float64[:]
    S_uv:    float64[:]
    S_ext:   float64[:]
    S_conv:  float64[:]
    S_turb:  float64[:]



    def __init__(self):
        pass



    def heat_sources(self):
        ## Star
        beta = extheat.grazing_angle_cg97(self.R)
        #beta = extheat.grazing_angle_dzn02(self.sigma, self.z, self.T_star, self.R_star, self.R)
        S_star = extheat.heat_star(self.sigma, self.T_star, self.R_star, self.R, beta)

        ## ISR
        S_isr  = extheat.heat_isr(self.sigma, self.T_isr)

        ## Accretion
        S_accr = extheat.heat_accr(self.sigma_max, self.M_star, self.dotM, self.R) \
                 * np.ones_like(self.rho)

        S_uv = S_star + S_isr
        S_ext = S_accr

        return S_uv, S_ext



    def heating_callback(self, T):
        self.S_uv, self.S_ext \
            = self.heat_sources()

        ## Convection
        g = - self.Omega**2 * self.z
        ell = np.sqrt(const.RR_gas/self.mu_mol * T[0]) / abs(self.Omega)
        #ell = z[sigma < 0.9*self.sigma_max][-1]
        self.F_conv, self.effconv, self.S_conv, dSconv_dT \
            = conv.convection(self.z, self.rho, T, g, self.mu_mol, self.gamma,
                              opac.fn_kappaR(T), ell)

        S = self.S_uv + self.S_ext + self.S_conv
        #dS_dT = dSconv_dT
        dS_dT = np.zeros_like(S)

        return S, dS_dT



    def advance_to(self, dt, rtol=1e-4, max_iter=10000):
        """
        Advance the system to a given time step size.
        """

        sigma = self.sigma

        z_0   = self.z.copy()
        rho_0 = self.rho.copy()
        T_0   = self.T.copy()
        E_0   = self.E.copy()

        dt_pass = 0.0
        while dt_pass < dt:

            dt_ = dt - dt_pass

            z   = z_0.copy()
            rho = rho_0.copy()
            T   = T_0.copy()
            E   = E_0.copy()

            n_iter = 0
            while True:

                ## Opacties
                kappaP = opac.fn_kappaP(T)
                kappaR = opac.fn_kappaR(T)

                ##
                ## Radiative transfer and thermal balance

                T_new, E_new, F_rad_new, dt_ \
                    = rttb.advance2_lin(sigma, rho, T, T_0, E, E_0, self.C_v,
                                        self.heating_callback, kappaP, kappaR, dt_)

                ##
                ## Adjust the hydrostatic configuration

                cT2 = const.RR_gas/self.mu_mol * T
                z_new, rho_new \
                    = hydrostat.adjust(sigma, rho, cT2, self.rho_ext, self.Omega**2)


                ## Check the convergence conditions
                cond_tb = np.all( np.abs(T_new - T) <= rtol*T )
                cond_rt = np.all( np.abs(E_new - E) <= rtol*E )
                if cond_tb & cond_rt:
                    break

                z   = z_new.copy()
                rho = rho_new.copy()
                T   = T_new.copy()
                E   = E_new.copy()

                n_iter += 1
                if n_iter >= max_iter:
                    #print("T =", T)
                    #print("E =", E)
                    #print("rho =", rho)
                    raise ValueError("advance_to: n_iter >= max_iter")

            z_0   = z_new.copy()
            rho_0 = rho_new.copy()
            T_0   = T_new.copy()
            E_0   = E_new.copy()

            dt_pass += dt_

        self.z       = z_new.copy()
        self.rho     = rho_new.copy()
        self.T       = T_new.copy()
        self.E       = E_new.copy()
        self.F_rad   = F_rad_new.copy()

        return



def init(model):

    ## Number of nodes
    model.n_nod = 1001

    ##
    ## Make logarithmic grid of the surface density, `sigma` [g cm-2]

    ## Outer bound of the column
    tau_out = 1e-5
    T_out = 3e2  ## [K]
    sigma_out = tau_out / opac.fn_kappaP(T_out)
    ## NB: If `inverse=True` then the surface density values grow from the upper bound
    model.sigma = inicond.sigma_grid(model.n_nod, model.sigma_max, sigma_out, inverse=False)

    ##
    ## Make initial distributions

    ## Nodes' vertical coordinates [cm], volume density [g cm-3] and temperature [K]
    T_00 = 100.0  ## [K]
    model.z, model.rho, model.T \
        = inicond.isothermal(model.sigma, T_00, model.rho_ext, model.mu_mol, model.Omega,
                             verbose=True)

    ## Initial radiative energy distribution [erg cm-3]
    T_cmb = 2.73
    model.E = const.a_rad*T_cmb**4 * np.ones_like(model.sigma)
    #model.E = const.a_rad*T**4
    ## Radiative flux for _uniform_ radiative energy distribution [erg cm-2 s-1]
    model.F_rad = np.zeros_like(model.sigma)

    ## External heat sources
    model.S_uv, model.S_ext \
        = model.heat_sources()

    ## Convection
    model.F_conv  = np.zeros_like(model.sigma)
    model.effconv = np.zeros_like(model.sigma)
    model.S_conv  = np.zeros_like(model.sigma)



def run(model, t_ss):
    print("run:")

    ## Index of the current time point
    n = 0
    ## Index of the current snapshot time point
    n_ss = 0

    nt_ss = []

    ## Initial time point
    #t = np.array([ 0.0 ])
    t = [ 0.0 ]
    ## Initial time step
    dt = 1.0  ## [s]

    while True:

        ## Snapshot time?
        if t[-1] >= t_ss[n_ss]:
            write_snapshot(model, t[-1], n_ss)
            nt_ss = np.append(nt_ss, [n])
            n_ss += 1

        ## Time to stop?
        if t[-1] >= model.t_fin:
            break

        ## Going to cross the snapshot time?
        if t[-1] + dt > t_ss[n_ss]:
            dt = t_ss[n_ss] - t[-1]

        try:
            ## Advance to the given time step
            model.advance_to(dt)
        except ValueError as e:
            write_snapshot(model, t[-1], 999)
            raise ValueError("run_pure: ValueError in `advance_to`")

        ## Switch to the next time point
        t_new = t[-1] + dt
        #t = np.vstack([t, t_new])
        t.append(t_new)

        if not (n % 100):
            print("%d:  t = %.2e [yr]    dt = %.2e [yr]" \
                  % (n, t[-1]/const.year, dt/const.year))

        #dt *= 1.001
        dt *= 1.01
        n += 1

    print("run: done")
    print("%d:  t = %.2e [yr]" % (n, t[-1]/const.year))



def write_snapshot(model, t, n_ss):
    ffullname = '%s/%s%03d.gz' % (model.fpath, model.fbase, n_ss)
    print("Write snapshot '%s' at t = %.2e [yr]" % (ffullname, t/const.yr))

    X = np.stack((model.sigma, model.z, model.rho, model.T, model.E,
                  model.F_rad, model.S_uv, model.S_ext, model.F_conv, model.effconv, model.S_conv), axis=1)

    f = gzip.open(ffullname, 'wt')
    f.write("%e\n" % t)
    np.savetxt(f, X, fmt='%.6e', comments='# ',
               header="sigma [g cm-2], z [cm], rho [g cm-3], T [K], E [erg cm-3]"
               ", F_rad [erg cm-2 s-1], S_uv [erg g-1 s-1], S_ext [erg g-1 s-1]"
               ", F_conv [erg cm-2 s-1], effconv, S_conv [erg g-1 s-1], S_turb [erg g-1 s-1]")
    f.close()



##
## The source is executed as a main program
##

if __name__ == '__main__':

    model = Model()

    ##
    ## Read parameters into the model instance

    print("Read parameters:")

    ## Path to data folder
    model.fpath = 'conv_dotM=1e-6'

    import importlib
    param = importlib.import_module(model.fpath + '.param')

    keys = []
    for key in dir(param):
        val = getattr(param, key)
        if type(val) is int or type(val) is float:
            setattr(model, key, val)
            keys.append(key)
    print(" ", keys)

    ##
    ## Parameters of the run

    model.fbase = ''

    ## Final time [s]
    model.t_fin = 1000.0 * const.yr

    ## Snapshot time points [s]
    #t_ss = np.arange(0.0, model.t_fin, 0.25*const.yr)
    t_ss = np.linspace(0.0, 1.0, 50)**3 * model.t_fin
    print("t_ss [yr] =", t_ss/const.yr)
    model.t_ss = np.unique( np.concatenate((t_ss, [model.t_fin])) )


    ##
    ## Init and run

    print("dotM = %.2e [M_sol/yr]" % (model.dotM/(const.M_sol/const.yr)))

    init(model)
    run(model, model.t_ss)